Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq248242 194 3e-45 seq280709 190 3e-44 seq133452 185 1e-42 seq321684 167 4e-37 seq253220 167 4e-37 seq210301 93.3 7e-15 seq197694 86.0 1e-12 seq311424 80.6 4e-11 >seq248242 Length=97135 Score = 194 bits (214), Expect = 3e-45 Identities = 206/269 (77%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||||||| || ||| | || ||||||||||||||||||||||||||||| | Sbjct 79892 CGCCAAGCGTCATCGCAAGGTCT-TGCGTGATAACATCCAAGGAATCACCAAGCCAGCAA 79950 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || |||||||| ||||||||| || || | |||| ||||||| Sbjct 79951 TCCGTCGTCTTGCCCGCCGTGGTGGTGTCAAGCGTATCAGCGGTCTCATCTACGAAGAGA 80010 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| | ||| ||||||| ||| ||||||| |||||| || ||| || Sbjct 80011 CCCGTGGTGTCCTCAAGGTCTTCCTTGAGAATGTTATCCGTGATGCCGTCACCTACTGCG 80070 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| ||||||| ||||||| || |||| | || | Sbjct 80071 AGCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTCTACGCTCTGAAGAGGCAGG 80130 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| | || || || ||| ||||| Sbjct 80131 GACGTACCCTCTACGGATTCGGAGGTTAA 80159 >seq280709 Length=193982 Score = 190 bits (210), Expect = 3e-44 Identities = 205/269 (76%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||||||| || ||| | || ||||||||||| ||||||||||||||||||| Sbjct 134465 CGCCAAGCGTCATCGCAAGGTCT-TGCGTGATAACATCCAGGGAATCACCAAGCCAGCTA 134523 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || |||||||| ||||||||| || || | |||| ||||||| Sbjct 134524 TCCGTCGTCTTGCCCGCCGTGGTGGTGTCAAGCGTATCAGCGGTCTTATCTACGAAGAGA 134583 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| |||| | || | |||||| ||| ||| |||| |||||| || ||| || Sbjct 134584 CCCGTGGTGTTCTCAAAGTTTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCG 134643 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | |||||||| || |||||||| ||||||| || | || | || | Sbjct 134644 AGCACGCCAAGAGGAAGACTGTTACTGCCATGGATGTCGTCTACGCTCTCAAGAGGCAGG 134703 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| | || || || ||| ||||| Sbjct 134704 GACGTACCCTCTACGGATTCGGAGGTTAA 134732 >seq133452 Length=28721 Score = 185 bits (204), Expect = 1e-42 Identities = 204/269 (76%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGA-TCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | ||| | || ||||||||||| ||||||||||||||||| | Sbjct 26195 CGCCAAGCGTCATCGCAAAGTCT-TGCGTGATAACATCCAGGGAATCACCAAGCCAGCCA 26253 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||| |||||||| ||||||||| || || | |||| ||||||| Sbjct 26254 TCCGTCGTCTTGCTCGCCGTGGTGGTGTCAAGCGTATCAGCGGCCTCATCTACGAAGAGA 26313 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| | ||| | ||||| ||| || |||| ||||||| || ||| || Sbjct 26314 CCCGTGGTGTCCTCAAGGTTTTCCTTGAGAATGTCATCCGTGATGCTGTCACCTACTGCG 26373 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| ||||||| | ||||| || |||| | || | Sbjct 26374 AGCACGCAAAGAGGAAGACCGTCACCGCCATGGACGTTGTCTACGCCCTGAAGAGGCAGG 26433 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| | || || || ||| ||||| Sbjct 26434 GACGTACTCTCTACGGATTCGGAGGTTAA 26462 >seq321684 Length=45064 Score = 167 bits (184), Expect = 4e-37 Identities = 193/260 (74%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| ||| ||||| ||||||||||| ||||| ||||| |||||| Sbjct 12744 GCCAAGCGTCATCGCAAGGTTCTACGAGACAACATCCAAGGTATCACGAAGCCTGCTATC 12803 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | ||||||||||| | ||||||| | |||| ||||||| Sbjct 12804 CGCCGTCTAGCAAGAAGAGGTGGAGTCAAAAGAATCTCTGGTCTCATCTACGAAGAGACA 12863 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||| ||||| | ||| || |||| |||||| || ||| ||| Sbjct 12864 CGCGGTGTACTGAAAGTCTTCTTGGAGAATGTCATCCGTGATGCCGTCACCTACTGTGAG 12923 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| ||||| ||||||| | ||||||||| |||| | || ||| Sbjct 12924 CACGCCAAACGCAAGACCGTCACAGCCATGGACGTGGTCTATGCACTGAAGAGGCAGGGC 12983 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | || |||||||| Sbjct 12984 CGTACCCTGTACGGTTTTGG 13003 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||||| ||| ||||| ||||||||||| ||||| ||||| |||||| Sbjct 5275 GCCAAACGTCATCGCAAGGTTCTCCGAGACAACATCCAAGGTATCACGAAGCCTGCTATC 5334 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | ||||||||||| | ||||||| | |||| ||||||| Sbjct 5335 CGCCGTCTAGCAAGAAGAGGTGGAGTCAAAAGAATCTCTGGTCTCATCTACGAAGAGACA 5394 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || ||| |||| ||||| | ||| || |||| |||||| || ||| ||| Sbjct 5395 CGCCGTGTACTGAAAGTCTTCTTGGAGAATGTCATCCGTGATGCCGTCACCTACTGTGAG 5454 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| ||||| ||||||| | ||||||||| |||| | || ||| Sbjct 5455 CACGCCAAACGAAAGACCGTCACAGCCATGGACGTGGTCTATGCACTGAAGAGGCAGGGC 5514 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | || |||||||| Sbjct 5515 CGTACCCTGTACGGTTTTGG 5534 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||||| ||| ||||| ||||||||||| ||||| ||||| |||||| Sbjct 36361 GCCAAACGTCATCGCAAGGTTCTACGAGACAACATCCAAGGTATCACGAAGCCTGCTATC 36420 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | ||||||||||| | ||||||| | |||| ||||||| Sbjct 36421 CGCCGTCTAGCAAGAAGAGGTGGAGTCAAAAGAATCTCTGGTCTCATCTACGAAGAGACA 36480 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||| ||||| | ||| || |||| |||||| || ||| ||| Sbjct 36481 CGCGGTGTACTGAAAGTCTTCTTGGAGAATGTCATCCGTGATGCCGTCACCTACTGTGAG 36540 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || | ||||| ||||| ||||| ||||||| | ||||||||| |||| | || ||| Sbjct 36541 CAGCCCAAACGAAAGACCGTCACAGCCATGGACGTGGTCTATGCACTGAAGAGGCAGGGC 36600 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | || |||||||| Sbjct 36601 CGTACCCTGTACGGTTTTGG 36620 Score = 149 bits (164), Expect = 1e-31 Identities = 191/261 (73%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||||| ||| ||||| ||||||||||| ||||| ||||| |||||| Sbjct 25182 GCCAAACGTCATCGCAAGGTTCTACGAGACAACATCCAAGGTATCACGAAGCCTGCTATC 25241 Query 16493 CGTCGT-CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| || || | | ||||||||||| | ||||||| | |||| ||||||| Sbjct 25242 CGCCGTCCTAGCAAGAAGAGGTGGAGTCAAAAGAATCTCTGGTCTCATCTACGAAGAGAC 25301 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||| ||||| | ||| || |||| |||||| || ||| || Sbjct 25302 ACGCGGTGTACTGAAAGTCTTCTTGGAGAATGTCATCCGTGATGCCGTCACCTACTGTGA 25361 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| ||||| ||||||| | ||||||||| |||| | || || Sbjct 25362 GCACGCCAAACG-AAGACCGTCACAGCCATGGACGTGGTCTATGCACTGAAGAGGCAGGG 25420 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | || |||||||| Sbjct 25421 ACGTACCCTGTACGGTTTTGG 25441 Score = 149 bits (164), Expect = 1e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 || |||||||||| ||| ||||| ||||||||||| ||||| ||||| |||||||| Sbjct 30716 AAACGTCATCGCAAGGTTCTACGAGACAACATCCAAGGTATCACGAAGCCTGCTATCCGC 30775 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 ||||| || | | ||||||||||| | ||||||| | |||| ||||||| || Sbjct 30776 CGTCTAGCAAGAAGAGGTGGAGTCAAAAGAATCTCTGGTCTCATCTACGAAGAGACACGC 30835 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 | ||| |||| ||||| | ||| || |||| |||||| || ||| |||||| Sbjct 30836 GGTGTACTGAAAGTCTTCTTGGAGAATGTCATCCGTGATGCCGTCACCTACTGTGAGCAC 30895 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 || ||||| ||||| ||||| ||||||| | ||||||||| |||| Sbjct 30896 GCCAAACGCAAGACCGTCACAGCCATGGACGTGGTCTATGCACTGAA 30942 Score = 147 bits (162), Expect = 3e-31 Identities = 191/260 (73%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||||| ||| ||||| | ||||||||| ||||| ||||| |||||| Sbjct 13452 GCCAAACGTCATCGCAAGGTTCT-CGAGACA-CATCCAAGGTATCACGAAGCCTGCTATC 13509 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | ||||||||||| | ||||||| | |||| ||||||| Sbjct 13510 CG-CGTCTAGCAAGAAGAGGTGGAGTCAAAAGAATCTCTGGTCTCATCTACGAAGAGACA 13568 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||| ||||| | ||| || |||| |||||| || ||| ||| Sbjct 13569 CGCGGTGTACTGAAAGTCTTCTTGGAGAATGTCATCCGTGATGCCGTCACCTACTGTGAG 13628 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| ||||| ||||||| | ||||||||| |||| | || ||| Sbjct 13629 CACGCCAAACGAAAGACCGTCACAGCCATGGACGTGGTCTATGCACTGAAGAGGCAGGGC 13688 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | || |||||||| Sbjct 13689 CGTACCCTGTACGGTTTTGG 13708 >seq253220 Length=129170 Score = 167 bits (184), Expect = 4e-37 Identities = 167/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | |||| || ||||||||||||||||||||||||||||| | Sbjct 35932 CGCCAAGCGTCATCGCA-AGGTCTTGCGTGATAACATCCAAGGAATCACCAAGCCAGCCA 35874 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || |||||||| ||||||||| || || | |||| ||||||| Sbjct 35873 TCCGTCGTCTTGCCCGCCGTGGTGGTGTCAAGCGTATCAGCGGTCTCATCTACGAAGAGA 35814 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| | ||| | ||||| ||| || |||| |||||| || ||| || Sbjct 35813 CCCGTGGTGTCCTCAAGGTTTTCCTTGAGAATGTCATCCGTGATGCCGTCACCTACTGCG 35754 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 ||||||| || | ||||| |||||| ||||||| Sbjct 35753 AGCACGCCAAGAGGAAGACCGTCACCGCCATGGA 35720 >seq210301 Length=14662 Score = 93.3 bits (102), Expect = 7e-15 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| ||| ||||| ||||||||||| ||||| ||||| |||||| Sbjct 12579 GCCAAGCGTCATCGCAAGGTTCTACGAGACAACATCCAAGGTATCACGAAGCCTGCTATC 12520 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||| |||| || | | ||||||||||| | ||||| | | |||| ||||||| Sbjct 12519 CGTTGTCTAGCAAGAAGAGGTGGAGTCAAAAGATTCTCTAGTCTCATCTACGAAGAGACA 12460 Query 16553 CGTGATGTTTTGAAGATCTTC 16573 || | || |||| ||||| Sbjct 12459 CGCGGCGTACTGAAAGTCTTC 12439 >seq197694 Length=137157 Score = 86.0 bits (94), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| ||| ||||| ||||||||||| ||||| ||||| |||||| Sbjct 119129 GCCAAGCGTCATCGCAAGGTTCTACGAGACAACATCCAAGGTATCACAAAGCCTGCTATC 119188 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||| || | ||||||||||| | ||||||| | | |||| ||||| Sbjct 119189 CTCCGTCTAGC---AAGAGGTGGAGTCAAAAGAATCTCTGGTCTCATATATGTAGAGACA 119245 Query 16553 CGTGATGTTTTGAAGATCTTC 16573 || | ||| |||| ||||| Sbjct 119246 CGCGGTGTACTGAAAGTCTTC 119266 >seq311424 Length=31888 Score = 80.6 bits (88), Expect = 4e-11 Identities = 113/158 (72%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 16483 GCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTA 16542 ||| |||||||| ||||| || | |||||||||||| || ||||||| | ||||| Sbjct 2002 GCCTGCTATCCGCCGTCTAGCAAAAAGAGGTGGAGTCAAGAGTATCTCTGGTCTTGTCTA 2061 Query 16543 TGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCA 16602 || || |||| ||| |||| ||||| | ||| || ||| |||||| || Sbjct 2062 CGA---GACACGTGGTGTACTGAAAGTCTTCTTGGTGACTGTCATCTGTGATGCCATCAC 2118 Query 16603 CTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCA 16640 |||| ||||||| || || ||||||||||| |||| Sbjct 2119 CTATTGTGAGCACGTCAAGCGCAAGACTGTCACATCCA 2156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78780067186242