Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_006879.1 Length=34450 Score E Sequences producing significant alignments: (Bits) Value seq201746 197 3e-46 >seq201746 Length=230 Score = 197 bits (218), Expect = 3e-46 Identities = 187/229 (82%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 5684 ATGCTTTTGATGGTGGAGGGGTCCATCTGATCAGAAAACACGATCTTTTTATTGTCAAGT 5743 |||| ||||| |||| | |||||||| ||||||| || ||||||| ||||| | Sbjct 230 ATGCCTTTGAGGGTGCCGCA-TCCATCTGGTCAGAAAG-ACAATCTTTTG--TGTCAGCT 175 Query 5744 TTGGTGGCGAAAGACCCGTAGAGGGCGTTGGAAAGCAACTTGGCGATGG-AGCGCAGGG- 5801 | |||||| || |||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 174 TGGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGGG 115 Query 5802 -TCTGATTTTTCTCCCGATCGGCCCTCTCCTTGGCGGCGATGTTGAGTTGCACGTACTCG 5860 | || ||||| | |||||||| | ||||||||| |||||||| || |||||||| ||| Sbjct 114 TTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCG 56 Query 5861 CGGGCCACGCACCGCCACTCGGGGAACACGGCGGTGCGCTCGTCGGGCA 5909 || || ||||||||||| || ||||| ||| |||||||||||||||| Sbjct 55 CGCGCAACGCACCGCCATTC-GGGAAAGCGG-TGTGCGCTCGTCGGGCA 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109696296489136