Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq295142 302 6e-77 seq305029 223 4e-53 seq129531 203 4e-47 seq289945 163 4e-35 seq140081 95.1 2e-14 seq289887 86.0 8e-12 seq256343 86.0 8e-12 >seq295142 Length=2525 Score = 302 bits (334), Expect = 6e-77 Identities = 606/893 (68%), Gaps = 13/893 (1%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 |||||||||||| ||||||||||| || || || || || || || |||||||| Sbjct 1493 CATAACTCCCATCAGCTGGTATTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCTTC 1552 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 || || || ||||||||||| || || || || ||||| | || |||||| | | Sbjct 1553 CAGCGAGATGTTTTCCATGAAGTCGAATGGGTTCTCGACATTCCAGATCTTTTTACAGTC 1612 Query 33120 CAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33179 | ||| || ||| || || || || || || || || || ||||| | | ||| Sbjct 1613 AAGCTCAACAAGCAACCTGTCGGCTACAAACTCGATGTAGGTCTTCATGAGGCCGGCATT 1672 Query 33180 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 33239 ||| || || || || ||||| | || || || || ||||| || ||||| Sbjct 1673 CATACCGATGAGAGAGCAGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACCGC 1732 Query 33240 ATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGAT-GCAAT--AAATGTTTAAA 33296 || | || || || |||| || ||| | | | | ||| || || Sbjct 1733 TTCCCTGATGATCCCCTGGACATGAGCTTC---CGATGGCTTGTTGTTGAGATGCTTGAA 1789 Query 33297 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 33356 ||||| |||||| || |||||||| |||||||||||||| || || ||||| || || || Sbjct 1790 CATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAA 1849 Query 33357 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGA 33416 || || || ||||| || || || || || ||||| || || | || || || || || Sbjct 1850 GGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGA 1909 Query 33417 AAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC 33476 |||||||| || |||||||| || || |||| | || ||| | | |||||||| Sbjct 1910 GAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTACCAAAGTCTGCGCTGTC 1969 Query 33477 ---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 | ||||| | | ||||| | || ||||| | ||||| ||||| || || | Sbjct 1970 GCTACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCTCAAC 2029 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGA 33591 |||||| ||||| || | | | | | |||||| | || || ||||| | || || Sbjct 2030 GGCATTGAAGAGGTAATCTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGTAATGA 2089 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 ||||||||| || || ||||||||||| || ||||| || ||||||||||| || ||| Sbjct 2090 --ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTCGCC 2147 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 || | |||||| |||||| | ||| | ||| |||| || ||||| || || || || Sbjct 2148 TCTGCAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCATCG 2207 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33771 || || || || || || | ||||| || || | | || | ||| || || Sbjct 2208 CTTGCAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTG 2267 Query 33772 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 33831 ||||| | | ||||| || | ||| || || || | ||||| || |||||||| Sbjct 2268 GCCCAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCC 2327 Query 33832 GCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 ||||| || || | | ||||||||||| ||||||||| ||||| || ||||| Sbjct 2328 GCCTTCTTGTAGAATTGCCAGATGTCATGATATTGGATGGGGAAGATGACAAA 2380 >seq305029 Length=127772 Score = 223 bits (246), Expect = 4e-53 Identities = 378/538 (70%), Gaps = 16/538 (3%) Strand=Plus/Minus Query 62919 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTT 62978 ||||||| || | | ||| | || ||||| || || || ||||| || ||||| ||| Sbjct 94094 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 94035 Query 62979 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 63038 || || |||||||| |||||||| ||||||| ||||| || || || |||| ||| Sbjct 94034 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTACAGCATATATGGGGTA 93975 Query 63039 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAT 63098 ||||| || | |||||||| || || || | ||| | | | ||||| ||| | | Sbjct 93974 CCAGTCTCTGTTTGAGATTCAATGATGGCATACCACAGAGCCTGGGCCTTCATTGTC--T 93917 Query 63099 TTGTATCTCCTTTC--TCTTTCGTATAGT----GTATACAATCGTTCGAACTCGTCTCCC 63152 | || | ||||| |||||| ||| | ||| | | ||| || || |||||| Sbjct 93916 TCCTACC--CTTTCCTTCTTTCTCATACTTCTCGTAGAGCTT--TTCAAATTCATCTCCC 93861 Query 63153 CAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63212 ||||| || || | ||||| ||||||| || ||||| | | ||| || || ||| | Sbjct 93860 CAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGGGTCCAGTCACCATCAGCT 93801 Query 63213 TTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCT 63271 | || | ||||||||||||||||| ||||| || || ||| || ||||||| || ||| Sbjct 93800 TCAACCCTCTTCATAAAGAGATCAGGGATCCAGAGGGC-ATAGAACAGATCTCGGGCTCT 93742 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 |||||||| || || ||||| ||| || | ||| | ||||||| |||||| Sbjct 93741 CTGTTCCTCCTTGCCGTGGTTCTTCTTACAGTCTAAGAAATCATGGATATCAGCATGCCA 93682 Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 63391 || || | ||| ||||| | | ||||| || || || ||||||||||||| ||||| Sbjct 93681 TGGCTCTAGGTAGATGGCAAAGGCACCAGGACGCTTATTGCCTCCCTGATCTACATATCT 93622 Query 63392 AGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTTGATATACCATTGGT 63448 ||| || || || || || | | |||||| ||||| ||| || || | ||||| || Sbjct 93621 AGCTGTATTGTTGTACACACGAAGCATTGGTAATAA-ACCATTGGAGTTGCCATTTGT 93565 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||| || || ||||||||||| || || | ||||| ||||||| || ||||| | | Sbjct 92218 TTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGTGT 92159 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63255 ||| || || || | | || | ||||| ||||||||||| ||||| || || ||| | Sbjct 92158 CCAGTCACCATCGGCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGGGC-ATAGA 92100 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286 |||| ||||| | ||| |||||||| || || Sbjct 92099 ATAGGTCTCTAGCTCTCTGTTCCTCCTTGCC 92069 >seq129531 Length=564 Score = 203 bits (224), Expect = 4e-47 Identities = 278/386 (72%), Gaps = 7/386 (2%) Strand=Plus/Minus Query 33288 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTC 33347 |||||| ||||||| ||| || || |||||||| |||||||||||||| || || ||||| Sbjct 384 ATGTTTGAACATCAGACAGGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTC 325 Query 33348 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA 33407 || || || || || || ||||| || || || || || ||||| || || | ||| || Sbjct 324 ATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCAAA 265 Query 33408 TGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACC 33467 || || || |||||||| || |||||||| || || |||| | || ||| | | Sbjct 264 GGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTGCCAAAGTC 205 Query 33468 GGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 33524 |||||||| | ||||| | ||||| | || ||||| | || || ||||| Sbjct 204 TGCGCTGTCGCTACTGATCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCATGGCAT 145 Query 33525 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 33584 || || | |||||| ||||| || | | | | | |||||| | || || ||||| Sbjct 144 GGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTGGATCTTTGATGTATGTGTCGAT 85 Query 33585 CA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33642 | || || ||||||||| || || ||||||||||| || ||||| || ||||||||| Sbjct 84 GAGTAATGA--ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAA 27 Query 33643 CATCTAGCCTCGGTAATCTGTACTTC 33668 || || ||||| | |||||| ||||| Sbjct 26 CACCTTGCCTCTGCAATCTGCACTTC 1 >seq289945 Length=532 Score = 163 bits (180), Expect = 4e-35 Identities = 259/371 (70%), Gaps = 3/371 (1%) Strand=Plus/Minus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 || || || || ||||| ||||| || ||||| |||||| | | || |||||||| Sbjct 381 GTGCGAAGGTAATACATACCCGTCTTCAGACCCGATCTCCATGCAAAGAAGTGCATACTG 322 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 ||||| ||| ||| | || || || || || ||||| | |||||||| ||||| ||| Sbjct 321 GTTAGCTTGCCATAGTTTGGTTCAGCAATGTGAATATTAAGTGATTGACTCTGATCAATG 262 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 | || || | ||| ||||||| | || | ||||| |||| || ||||||| ||| Sbjct 261 TATGCACCGCGGTCAACAGCCATCTGAATAACAGTCTTCTGTGAGATCTCCCAAACAGTC 202 Query 62205 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCT 62261 ||||| | | ||| || || ||||| | || | |||||||| |||||| | Sbjct 201 TTATACAATGCCTTGATGTCATCTGGGATTGATGGAATGTTCTGAATAGATCCAGAGTGA 142 Query 62262 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62321 || || | | ||||||| ||||||||| ||| | | ||||| | | ||||| Sbjct 141 GCAATGAGCATATTCTTCATCTCATCAGACCACAGACCCATGTCGGTAAGGTCCCTAAGA 82 Query 62322 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62381 ||||| |||| || || ||||| ||||| || | || | || ||||| ||||||||| Sbjct 81 AGATGATGATTGACGACCTGAAACTCTCCTGAAAGCACACGACGCGTGTAGATATTACTG 22 Query 62382 GTATACGGTTC 62392 || ||||| || Sbjct 21 GTGTACGGCTC 11 >seq140081 Length=702 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 80955 GTGATAGGTATCGATGAAGGACAGTTCTTTCCAGACATTGT-TGAA-TTCTGTGAGCGTA 81012 || ||||| ||||||||||| || || ||||| | ||||| |||| || ||||| | Sbjct 212 GTCATAGGAATCGATGAAGGCCAATTTTTTCCTG--ATTGTGTGAAGTTTTGTGAAGAAA 269 Query 81013 TGGCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTCGATGGGACATTTCAACGTAAAC 81072 |||| ||| ||| ||||| | || ||||| ||| | || || ||||| || | || Sbjct 270 TGGCCAACCTAGGCAAAATCATCATTGTAGCTGCATTAGACGGAACATTCCAGAGGAAGG 329 Query 81073 CGTTTAATAATATTTTGAATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCTG 81132 ||| | ||||||| |||||| | ||| | |||||| || | || || | |||| Sbjct 330 GTTTTGGTGATATTTTAAATCTTGTACCACTTGCTGAAAGTGTCATCAAGCTCAACGCTG 389 Query 81133 TGTGTATGAAATGCTTTAAGGAGGCTTC 81160 | |||||| | |||| ||| || ||||| Sbjct 390 TCTGTATGCATTGCTATAACGAAGCTTC 417 >seq289887 Length=335 Score = 86.0 bits (94), Expect = 8e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||| || || ||||||||||| || || | ||||| ||||||| || ||||| | | Sbjct 185 TTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGTGT 244 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63255 ||| || || || | | || | ||||| ||||||||||| ||||| || || ||| | Sbjct 245 CCAGTCACCATCGGCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGGGC-ATAGA 303 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286 | ||||||| | ||| |||||||| || || Sbjct 304 ACAGATCTCGAGCTCTCTGTTCCTCCTTGCC 334 >seq256343 Length=109058 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/108 (79%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATG 33621 |||||| | || || ||||| | || || ||||||||| || || ||||||||||| Sbjct 30504 ATCTTTGATGTATGTGTCGATGAGTAATGA--ATACATTTCTGAGTGGATGTTTTCAATT 30447 Query 33622 GCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669 || ||||| || ||||||||||| || ||||| | |||||| |||||| Sbjct 30446 GCAATCTGGAACCCGTAGAAACACCTTGCCTCTGCAATCTGCACTTCT 30399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620433654769040