Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq172955 98.7 9e-16 seq21330 89.7 5e-13 seq233793 86.0 6e-12 seq15040 86.0 6e-12 seq177272 82.4 7e-11 seq171612 82.4 7e-11 seq124407 82.4 7e-11 >seq172955 Length=397 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || | ||||| | || | || ||| | Sbjct 95 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGC 154 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||||| ||||| ||||| || || |||||||| Sbjct 155 GACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGATCAG 214 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||||| |||||||| |||| | | | ||||| ||| Sbjct 215 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTATCAGACTACAAC 274 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || ||| ||||||| || || || || | ||||| Sbjct 275 ATCCAAAAGGAGTCAACTCTCCATCTTGTTCTCAGGCTCCGTGGAGG 321 >seq21330 Length=129093 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 |||||||| || || || | ||| || |||||||||||||| ||||| || |||||||| Sbjct 74954 GAGGGTAAGATGCATGGTTTCCTTCGTATGTACTGGGCCAAGAAGATCCTGGAGTGGACC 74895 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836 | | || ||| | || | ||| | | || || || |||||| | ||| | ||| Sbjct 74894 GCATCACCGGAGGAAGCTTTGGAGATTGCCATCTACCTCAACGATCGCTACTCATTGGAC 74835 Query 71837 GGTCGCGATCCTAACGGTTATGTCGGT 71863 || ||||| || ||||||||||| ||| Sbjct 74834 GGCCGCGACCCCAACGGTTATGTAGGT 74808 >seq233793 Length=42987 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||||| ||||| ||||| || || |||||||| Sbjct 12957 GACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGATCAG 12898 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||||| |||||||| || | | | | ||||| ||| Sbjct 12897 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGACGGCCGCACTCTATCAGACTACAAC 12838 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || ||| ||||||| || || || || | ||||| Sbjct 12837 ATCCAAAAGGAGTCAACTCTCCATCTCGTTCTCAGGCTCCGTGGAGG 12791 >seq15040 Length=705 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | ||||| |||| | || ||| Sbjct 322 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT 381 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||||| ||||| ||||| || || |||||||| Sbjct 382 GACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGATCAG 441 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || || || |||||||| || | | | | ||||| ||| Sbjct 442 CAGCGTCTAATCTTCGCTGGAAAGCAACTCGAGGACGGCCGCACTCTATCAGACTACAAC 501 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||||||| ||||||| || || || || | ||||| Sbjct 502 ATCCAGAAGGAATCTACTCTCCATCTCGTTCTCAGGCTCCGTGGAGG 548 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || | ||||| | || | || ||| Sbjct 550 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 609 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | |||||| ||||||| ||||||||||| || || || ||||| Sbjct 610 GACACCATCGAGAATGTCAAAGCAAAGATTCAGGACAAAGAAGGCATTCCCCCTGATCAG 669 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGA 26923 || | ||||| | || ||||| |||||||| || Sbjct 670 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGA 704 >seq177272 Length=310 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || | ||||| |||| | || ||| Sbjct 238 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT 179 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||||| ||||| ||||| || || || ||||| Sbjct 178 GACACCATCGAGAATGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCCCCTGATCAG 119 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||||| ||||| ||||| | | | | ||||| ||| Sbjct 118 CAGCGTCTCATCTTCGCTGGCAAGCAACTGGAAGACGGCCGCACTCTATCAGACTACAAC 59 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTC 26978 || || || || || ||| ||||||| ||| Sbjct 58 ATCCAGAAGGAGTCAACTCTCCATCTTGTC 29 >seq171612 Length=420 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 26824 CAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCG 26883 ||| ||||||||||||| | |||||| ||||||| ||||||||||| || || || | Sbjct 314 CAAGCGACACCATCGAGAATGTCAAAGCAAAGATTCAGGACAAAGAAGGCATTCCCCCTG 373 Query 26884 ATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGA 26923 |||| || | ||||| | || ||||| |||||||| || Sbjct 374 ATCAGCAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGA 413 >seq124407 Length=407 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/167 (71%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||||| ||||| ||||| || || |||||||| Sbjct 39 GACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCC-CCCGATCAG 97 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||||| |||||||| || | | | | ||||| ||| Sbjct 98 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGACGGCCGCACTCTATCAGACTACAAC 157 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || ||| ||||||| || || || || | ||||| Sbjct 158 ATCCAAAAGGAGTCAACTCTCCATCTCGTTCTCAGGCTCCGTGGAGG 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476731033115680