Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq305029 158 3e-33 seq289945 102 2e-16 seq295142 84.2 6e-11 seq129531 84.2 6e-11 >seq305029 Length=127772 Score = 158 bits (174), Expect = 3e-33 Identities = 333/494 (67%), Gaps = 2/494 (0%) Strand=Plus/Plus Query 363758 ACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACC 363817 |||| ||||| | | || ||||||||||||| ||||||| || || || || || | Sbjct 93575 ACTCCAATGGTTTATTACCAATGCTTCGTGTGTACAACAATACAGCTAGATATGTAGATC 93634 Query 363818 AGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATA 363877 |||| || ||||| || || ||||| || || || ||||| ||||| |||| Sbjct 93635 AGGGAGGCAATAAGCGTCCTGGTGCCTTTGCCATCTACCTAGAGCCATGGCATGCTGATA 93694 Query 363878 TTTTTGAGTTTCTTGAGCTCCG-GAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGAT 363936 | ||| |||||| || ||| ||| || || |||||| | | || || ||| Sbjct 93695 TCCATGA-TTTCTTAGACTGTAAGAAGAACCACGGCAAGGAGGAACAGAGAGCCCGAGAT 93753 Query 363937 CTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAAT 363996 ||||||||||| || ||| | |||| | ||||||||| | || || || | | | Sbjct 93754 CTGTTCTATGCCCTCTGGATCCCTGATCTCTTTATGAAGAGGGTTGAAGCTGATGGTGAC 93813 Query 363997 TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTAT 364056 ||| | ||| | ||||| || ||||| || || || | || ||||| || || | | Sbjct 93814 TGGACCCTCATGTGCCCTCATGAATGCCCTGGCCTAGAAAACGTTTGGGGAGATGAATTT 93873 Query 364057 GTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAG 364116 | || ||||| |||||||| || ||||||| | | |||||||| || ||| Sbjct 93874 GAAAAGCTCTACGAGAAGTATGAGAAAGAAGGAAAGGGTAGGAAGACAATGAAGGCCCAG 93933 Query 364117 AAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTAC 364176 || |||| ||||||||| || || || | ||||| || || || |||||| ||||| Sbjct 93934 GCTCTGTGGTATGCCATCATTGAATCTCAAACAGAGACTGGTACCCCATATATGCTGTAC 93993 Query 364177 AAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAAC 364236 || || || ||| | ||| ||||| || || | || || || | || ||| Sbjct 93994 AAGGACCATTGTAACAGGAAGAGTAACCAACAAAACTTGGGAACCATCAAATGCAGTAAC 94053 Query 364237 CTATGTACCGAGAT 364250 || ||||| ||||| Sbjct 94054 CTGTGTACAGAGAT 94067 >seq289945 Length=532 Score = 102 bits (112), Expect = 2e-16 Identities = 243/360 (68%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 364802 TCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAG 364861 |||| |||| || || ||| | || | || || || ||||| ||||| |||| ||| | Sbjct 9 TCGAGCCGTACACCAGTAATATCTACACGCGTCGTGTGCTTTCAGGAGAGTTTCAGGTCG 68 Query 364862 TTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGA 364921 | ||| | | || | | ||| ||| ||||| || |||||| ||| ||||||| Sbjct 69 TCAATCATCATCTTCTTAGGGACCTTACCGACATGGGTCTGTGGTCTGATGAGATGAAGA 128 Query 364922 ACTATA-TCATCGC-CGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCT 364979 | ||| |||| || | || ||| ||| | |||||||||||| | | ||||| || | Sbjct 129 A-TATGCTCATTGCTCACTC-TGGATCTATTCAGAACATTCCATCAATCCCAGATGACAT 186 Query 364980 GAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGC 365039 ||| | | || || || || ||||| || || | ||| | ||| | ||||| | Sbjct 187 CAAGGCATTGTATAAGACTGTTTGGGAGATCTCACAGAAGACTGTTATTCAGATGGCTGT 246 Query 365040 CGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT--CATGACTCAGCCA 365097 || |||||||| | || |||||| || || |||| |||| ||| || | ||| Sbjct 247 TGACCGCGGTGCATACATTGATCAGAGTCAATCACTTAA--TATTCACATTGCTGAACCA 304 Query 365098 ACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157 | || | |||||| || ||||| |||| | |||| ||| ||||| ||||| ||| Sbjct 305 AACTATGGCAAGCTAACCAGTATGCACTTCTTTGCATGGAGATCGGGTCTGAAGACGGGT 364 >seq295142 Length=2525 Score = 84.2 bits (92), Expect = 6e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 22499 TTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGC 22558 |||| || || | || || ||||| ||||| || || | ||| |||||||| |||| Sbjct 1941 TTGCTTTCGCAGCAGTAGAGGGCATCTTCTTCTCGGGTTCCTTTGCCGCAATCTTCTGGC 1882 Query 22559 TaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATG 22618 | || ||||| | | ||||| || || || || |||||||| | || ||| |||| | Sbjct 1881 TCAAGAAACGAGGTCTGATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGACG 1822 Query 22619 AGGGTCTTCATACCGATTTTGCGTGTATG 22647 |||||||||| ||| ||||| ||| || Sbjct 1821 AGGGTCTTCACTGCGACTTTGCATGTCTG 1793 >seq129531 Length=564 Score = 84.2 bits (92), Expect = 6e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 22499 TTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGC 22558 |||| || || | || || ||||| ||||| || || | ||| ||| ||||| |||| Sbjct 224 TTGCTTTCGCAGCAGTAGAGGGCATCTTCTTCTCGGGTTCCTTTGCTGCGATCTTCTGGC 283 Query 22559 TaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATG 22618 | || ||||| | | ||||| || || || || |||||||| | || ||| |||| | Sbjct 284 TCAAGAAACGAGGTCTGATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGACG 343 Query 22619 AGGGTCTTCATACCGATTTTGCGTGTATG 22647 |||||||||| ||| ||||| ||| || Sbjct 344 AGGGTCTTCACTGCGACTTTGCCTGTCTG 372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1297963192624908