Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq171612 91.5 1e-13 seq15040 91.5 1e-13 seq172955 89.7 4e-13 seq283656 82.4 7e-11 seq229213 82.4 7e-11 seq177272 82.4 7e-11 >seq171612 Length=420 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/102 (80%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 24045 GCCAA-CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 ||||| ||||||||||||| | |||||| ||||||| |||||||||||||| || || Sbjct 312 GCCAAGCGACACCATCGAGAATGTCAAAGCAAAGATTCAGGACAAAGAAGGCATTCCCCC 371 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| ||| | || || | || |||||||||||||| || Sbjct 372 TGATCAGCAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGA 413 >seq15040 Length=705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || || | || || ||| | | Sbjct 550 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 609 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | |||||| ||||||| |||||||||||||| || || ||||| Sbjct 610 GACACCATCGAGAATGTCAAAGCAAAGATTCAGGACAAAGAAGGCATTCCCCCTGATCAG 669 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | || |||||||||||||| || Sbjct 670 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGA 704 >seq172955 Length=397 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || || | || || ||| | | | Sbjct 95 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGC 154 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||||| ||||| |||||||| || |||||||| Sbjct 155 GACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGATCAG 214 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | || || | || |||||||||||||| |||| Sbjct 215 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGATG 251 >seq283656 Length=776 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 24003 GTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAG 24062 || |||||||| || || ||| | || ||| |||| || || ||| || || || || Sbjct 775 GTGAAAACATTGACGGGGAAAACCATCACCCTCGAGGTGGAACCCAGTGATACTATTGAA 716 Query 24063 CAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATT 24122 | || || || ||| ||||| ||||| || ||||||||||| ||| | ||||| Sbjct 715 AATGTAAAGGCCAAAATTCAAGACAAGGAAGGTATCCCTCCCGATCAGCAGCGCCTGATC 656 Query 24123 TACGGCGGCAAGCAACTCGAAGATG 24147 | || ||||||||| || ||||||| Sbjct 655 TTCGCCGGCAAGCAGCTGGAAGATG 631 >seq229213 Length=300 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || || | || || ||| | | Sbjct 158 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 99 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||||| ||||| |||||||| || |||||||| Sbjct 98 GACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGATCAG 39 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | || |||||||||||||| || Sbjct 38 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGA 4 >seq177272 Length=310 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || || |||| || ||| | | Sbjct 238 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT 179 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||||| ||||| |||||||| || || ||||| Sbjct 178 GACACCATCGAGAATGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCCCCTGATCAG 119 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | || ||||||||||| ||||| Sbjct 118 CAGCGTCTCATCTTCGCTGGCAAGCAACTGGAAGA 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428244609473070