Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq80839 113 4e-20 seq283656 98.7 9e-16 seq305029 91.5 1e-13 seq233793 89.7 5e-13 seq172955 89.7 5e-13 seq305346 86.0 6e-12 seq252531 86.0 6e-12 seq171612 82.4 7e-11 >seq80839 Length=604 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| || ||||| || |||||||| || Sbjct 230 CCACCACGTAGACGAAGAACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCTGAT 171 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| ||| |||| |||||||||||||| ||||| Sbjct 170 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGA 111 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || ||| || ||||| | ||| | || || | | ||| | Sbjct 110 ATACCTTCTTTATCCTGGATCTTAGCCTTGACATTCTCTATGGTGTCAGAAGGCTCCACC 51 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || ||||| |||||||| Sbjct 50 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAATATCTGCAT 4 >seq283656 Length=776 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | | ||||| || || | ||| |||||||| || || ||||| || Sbjct 560 GCCACCACGGAGCCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGA 619 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || ||||||||||| ||| |||| | |||||||| || ||||| Sbjct 620 CAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCGGGAGG 679 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||||| ||| | | || | |||||| ||| || | Sbjct 680 GATACCTTCCTTGTCTTGAATTTTGGCCTTTACATTTTCAATAGTATCACTGGGTTCCAC 739 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 |||| ||| | |||||| || || | ||||| ||| Sbjct 740 CTCGAGGGTGATGGTTTTCCCCGTCAATGTTTTCACG 776 >seq305029 Length=127772 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 145675 TACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTT 145734 ||||||||| | |||| || || |||||||||||||||| ||||| || ||||| || Sbjct 95766 TACGATCTCTGTACACAGGTTACTGCATTTGATGGTTCCCAAGTTTTGTTGGTTACTCTT 95707 Query 145735 CCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 |||||| || ||||||||||||||| || || |||||||| Sbjct 95706 CCTGTTACAATGGTCCTTGTAGAGCATATATGGGGTACCAGTCTC 95662 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 145675 TACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTT 145734 ||||||||| | |||| || || |||||||||||||||| ||||| || ||||| || Sbjct 94071 TACGATCTCTGTACACAGGTTACTGCATTTGATGGTTCCCAAGTTTTGTTGGTTACTCTT 94012 Query 145735 CCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 |||||| || ||||||||| ||||| || || |||||||| Sbjct 94011 CCTGTTACAATGGTCCTTGTACAGCATATATGGGGTACCAGTCTC 93967 >seq233793 Length=42987 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || ||||||||||| |||||||| || | ||||| |||||| || |||||||| Sbjct 12821 GTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTGCCA 12880 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTG-CTT 131156 ||| |||| | ||||||||| || || || || ||||| ||||| ||| | | || ||| Sbjct 12881 GCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTC-CTGAATCTTTGCCTT 12939 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | ||| | || || | | ||| | || | || | ||| || || || || || Sbjct 12940 TACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGT 12999 Query 131217 TTTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 13000 CTTGACGAAGATCTGCAT 13017 >seq172955 Length=397 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || ||||||||||| |||||||| || | ||||| ||||| || |||||||| Sbjct 291 GTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCGAGTTGCTTGCCA 232 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTG-CTT 131156 ||| |||| | ||||||||| || || || || ||||| ||||| ||| | | || ||| Sbjct 231 GCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTC-CTGAATCTTTGCCTT 173 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | ||| | || ||| | | ||| | || | || | ||| || || || || || Sbjct 172 TACATTCTCGATGGTGTCGCTTGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGT 113 Query 131217 TTTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 112 CTTGACGAAGATCTGCAT 95 >seq305346 Length=360 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/208 (70%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || ||||||||||| |||||||| || | ||||| ||| || || |||||||| Sbjct 122 GTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCTTCGAGTTGCTTGCCA 181 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTG-CTT 131156 || |||| | ||||||||| || || ||||| ||||| ||||| ||| | | || ||| Sbjct 182 GCAAAGATGAGACGCTGCTGATCAGGGGGGATGCCTTCCTTGTC-CTGAATCTTTGCCTT 240 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | ||| | || || | | ||| | || | || | ||| || || || || || Sbjct 241 TACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGT 300 Query 131217 TTTTACGAAAATCTGCATGACTTATTTT 131244 || ||||| |||||||| ||| | ||| Sbjct 301 CTTGACGAAGATCTGCAT-ACTGACTTT 327 >seq252531 Length=82549 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | | ||||| || || | ||| |||||||| || || ||||| || Sbjct 589 GCCACCACGGAGCCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGA 530 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || ||||||||||| ||| |||||| ||||||||| || ||||| Sbjct 529 CAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATTAGACGCTGCTGATCGGGAGG 470 Query 131127 GATTCCT 131133 ||| ||| Sbjct 469 GATACCT 463 >seq171612 Length=420 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| || |||||||| ||| |||| | ||||||||| || || || || |||||||| Sbjct 414 GTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCTTT 355 Query 131139 GTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 ||| ||| | | ||| |||| | ||| | || ||| | | ||| | || | || | Sbjct 354 GTC-CTGAATCTTTGCTTTGACATTCTCGATGGTGTCGCTTGGCTCAACCTCAAGAGTGA 296 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || || || || || || ||||| |||||||| Sbjct 295 TGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470108263752960