Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq305346 87.8 1e-12 seq233793 87.8 1e-12 seq172955 87.8 1e-12 >seq305346 Length=360 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || ||||| || || | ||| || || ||||||||||| ||||||||||| | Sbjct 92 CCTCCACGCAGCCTGAGAACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAT 151 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| || | ||| ||||| ||| | || || ||||| || || || Sbjct 152 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGG 211 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || ||||| ||| || | | | ||||| | ||||| Sbjct 212 ATGCCTTCCTTGTCCTGAATCTTTGC--CTTTACATTCTCGATGGTGTCACTTGGCTCAA 269 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || || ||||| || |||||||| Sbjct 270 CCTCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 318 >seq233793 Length=42987 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || ||||| || || | ||| || || ||||||||||| ||||||||||| | Sbjct 12791 CCTCCACGGAGCCTGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAT 12850 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| | ||| ||||| || | || || ||||| || || || Sbjct 12851 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGA 12910 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || ||||| ||| || | | | ||||| | ||||| Sbjct 12911 ATGCCTTCCTTGTCCTGAATCTTTGC--CTTTACATTCTCGATGGTGTCACTTGGCTCAA 12968 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || || ||||| || |||||||| Sbjct 12969 CCTCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 13017 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || ||||| || || | ||| || || |||||||| || ||||||||||| | | Sbjct 13019 CCTCCACGGAGCCTGAGAACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGAC 13078 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| ||| ||||| || | || || ||||| || || || Sbjct 13079 AGAGTGCGGCCATCTTCCAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 13138 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||| | ||| | || | | | ||||| | ||||| Sbjct 13139 ATGCCTTCCTTGTCTTGAATCT-TTGCCTTACATTCTCGATGGTGTCACTTGGCTCAACC 13197 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || || ||||| || |||||||| Sbjct 13198 TCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 13244 >seq172955 Length=397 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || ||||| || || | ||| || || ||||||||||| ||||||||||| | Sbjct 321 CCTCCACGGAGCCTGAGAACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAT 262 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | ||| ||||| || | || || ||||| || || || Sbjct 261 AGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGA 202 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || ||||| ||| || | | | ||||||| ||||| Sbjct 201 ATGCCTTCCTTGTCCTGAATCTTTGC--CTTTACATTCTCGATGGTGTCGCTTGGCTCAA 144 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || || ||||| || |||||||| Sbjct 143 CCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403494362794060