Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq262164 140 2e-28 seq1493 125 5e-24 seq139241 118 7e-22 seq19459 104 2e-17 seq6532 100 2e-16 >seq262164 Length=90925 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 15416 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 15475 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 15476 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 15510 Score = 122 bits (134), Expect = 6e-23 Identities = 86/96 (90%), Gaps = 7/96 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||| ||||| |||||||||||||||||||||||||||||| || |||||||| Sbjct 34505 AAGCCCGGTCCCT-GGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 34563 Query 25957 TAATCCTTTCATGCGCGT-CACTAATTAGATGACGA 25991 |||||| ||||||||||| ||||||||||||||||| Sbjct 34564 TAATCCATTCATGCGCGTCCACTAATTAGATGACGA 34599 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 22676 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCTGCTATCGGTCTCGT 22735 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 22736 GCCAGTATTTAGCCTT 22751 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 19291 CTCTCTCTTCAGAGTTCTTTTCAACTTTCC-TCACGGTACTTGTCTGCTATCGGTCTCGT 19349 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 19350 GCCAGTATTTAGCCTT 19365 >seq1493 Length=52260 Score = 125 bits (138), Expect = 5e-24 Identities = 87/96 (91%), Gaps = 7/96 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGT-GGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 |||||||||||||||||||| |||||||||||||||||||||||| || ||||||| Sbjct 24454 AAGCCCGTTCCCTTGGCTGTAGGTTTCGCTAGATAGTAGATAGGGACTATGGGAATCTCG 24395 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| ||||||||||||||||| |||||||||| Sbjct 24394 TTAATCCATTCATGCGCGTCACTAA-TAGATGACGA 24360 >seq139241 Length=313 Score = 118 bits (130), Expect = 7e-22 Identities = 184/263 (70%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTAT 6259 ||||||||||||||| ||||| || || |||||||| ||||| | || || || || Sbjct 267 GTTCTACCGCTACAAGATGCCACGTCTCCTAGCCAAGGTTGAGGGAAGTGGGAATGGCAT 208 Query 6260 TAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTA 6319 |||||| ||||| | |||||| || | | ||| | | | | || | || || Sbjct 207 TAAAACTGTCATCATAAACATGGTGGAGATTGGCAAGTCCTTATGTAGACCACCTACATA 148 Query 6320 CCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGA 6379 ||| || || | ||| || || || ||||| || || || ||||||||| ||| || | Sbjct 147 CCCTACAAAGTTTTTTGGCTGTGAGCTTGGTGCCCAAACCCAGTTTGATTTCAAGAATAA 88 Query 6380 GCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTT 6439 |||||||| || || || |||||| | || ||| || |||||| | || || | ||| Sbjct 87 TCGCTTCATTGTAAATGGCTCGCATGATGCTAACAAACTTCAGGACATGCTAGATGTCTT 28 Query 6440 TATTCGCAAGTTTGTGCTGTGTC 6462 || || | ||||||||||| Sbjct 27 CATCAAAAAATATGTGCTGTGTC 5 >seq19459 Length=205 Score = 104 bits (114), Expect = 2e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 185 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCTGCTATCGGTCTCGT 126 Query 20007 GGTAATATTTAGCCT 20021 | | |||||||||| Sbjct 125 GCCAGTATTTAGCCT 111 >seq6532 Length=9725 Score = 100 bits (110), Expect = 2e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT-CG 20005 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 3720 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCTGCTATCGGTCTCCG 3779 Query 20006 CGGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 3780 TGCCAGTATTTAGCCTT 3796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333629500339814