Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq295142 279 6e-70 seq305029 244 1e-59 seq129531 185 1e-41 seq289945 167 3e-36 seq289887 89.7 6e-13 >seq295142 Length=2525 Score = 279 bits (308), Expect = 6e-70 Identities = 600/893 (67%), Gaps = 13/893 (1%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 |||||||||||| ||||||||||| || || || || || || || || ||||| Sbjct 1493 CATAACTCCCATCAGCTGGTATTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCTTC 1552 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476 | || || ||||||||||| |||||||| || ||||| | || |||||| | | Sbjct 1553 CAGCGAGATGTTTTCCATGAAGTCGAATGGGTTCTCGACATTCCAGATCTTTTTACAGTC 1612 Query 32477 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 32536 | ||| || ||| || || || ||||| || || || || ||||| | | ||| Sbjct 1613 AAGCTCAACAAGCAACCTGTCGGCTACAAACTCGATGTAGGTCTTCATGAGGCCGGCATT 1672 Query 32537 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 32596 ||| || || || || ||||| | || || || || ||||| || ||||| Sbjct 1673 CATACCGATGAGAGAGCAGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACCGC 1732 Query 32597 GTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAAT---AAATGTTTAAA 32653 || | || || || |||| || ||| | | ||| || || Sbjct 1733 TTCCCTGATGATCCCCTGGACATGAGCTTC---CGATGGCTTGTTGTTGAGATGCTTGAA 1789 Query 32654 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 32713 ||||| |||||| || |||||||| |||||||||||||| || || | ||| || || || Sbjct 1790 CATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAA 1849 Query 32714 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 32773 || || || ||||| || || || || || ||||| || || | ||||| || || || Sbjct 1850 GGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGA 1909 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC 32833 ||||| || || |||||||| || || |||| | || ||| | | |||||||| Sbjct 1910 GAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTACCAAAGTCTGCGCTGTC 1969 Query 32834 ---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 32890 | ||||| | | ||||| | || ||||| | ||||| ||||| ||||| | Sbjct 1970 GCTACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCTCAAC 2029 Query 32891 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGA 32948 ||||| ||||| || | | | | | |||||| | ||||| || || | || || Sbjct 2030 GGCATTGAAGAGGTAATCTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGTAATGA 2089 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 ||||||||| || || ||||||||||| || || || || |||||||| || || ||| Sbjct 2090 --ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTCGCC 2147 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 || | |||||| |||||| | ||| | ||| | || || ||||| || || || || Sbjct 2148 TCTGCAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCATCG 2207 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33128 || || || || || || | ||||| || || | | || | ||| || || Sbjct 2208 CTTGCAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTG 2267 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 ||||| | | ||||| || | ||| || || || | ||||| || |||||||| Sbjct 2268 GCCCAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCC 2327 Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 ||||| || || | | |||||||||||||||||| || || || || ||||| Sbjct 2328 GCCTTCTTGTAGAATTGCCAGATGTCATGATATTGGATGGGGAAGATGACAAA 2380 >seq305029 Length=127772 Score = 244 bits (270), Expect = 1e-59 Identities = 383/538 (71%), Gaps = 14/538 (3%) Strand=Plus/Minus Query 62774 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 62833 ||||||| || | | ||| | || ||||| || || || ||||| || ||||||||| Sbjct 94094 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 94035 Query 62834 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 62893 || || |||||||| |||||||| ||||||| ||||| || || || |||| ||| Sbjct 94034 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTACAGCATATATGGGGTA 93975 Query 62894 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAT 62953 ||||| || | |||||||| || || || | ||| | | | ||||| ||| | | Sbjct 93974 CCAGTCTCTGTTTGAGATTCAATGATGGCATACCACAGAGCCTGGGCCTTCATTGTC--T 93917 Query 62954 TTGTATCTCTTTTCT-CTTTCGTATAGT----GTATACAATCGTTCGAACTCGTCTCCCC 63008 | || | |||| || ||||| ||| | ||| | | ||| || || ||||||| Sbjct 93916 TCCTACC-CTTTCCTTCTTTCTCATACTTCTCGTAGAGCTT--TTCAAATTCATCTCCCC 93860 Query 63009 AAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63068 |||| || || || ||||| ||||||| || ||||| | | ||| || || ||| | | Sbjct 93859 AAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGGGTCCAGTCACCATCAGCTT 93800 Query 63069 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTA 63127 || | ||||||||||||||||| ||||| || || ||| || ||||||| || ||| Sbjct 93799 CAACCCTCTTCATAAAGAGATCAGGGATCCAGAGGGC-ATAGAACAGATCTCGGGCTCTC 93741 Query 63128 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63187 |||||||| || || ||||| ||| || | ||| | ||||||| |||||| Sbjct 93740 TGTTCCTCCTTGCCGTGGTTCTTCTTACAGTCTAAGAAATCATGGATATCAGCATGCCAT 93681 Query 63188 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63247 || || | ||| ||||| | | ||||| || || || ||||||||||||| |||||| Sbjct 93680 GGCTCTAGGTAGATGGCAAAGGCACCAGGACGCTTATTGCCTCCCTGATCTACATATCTA 93621 Query 63248 GCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGTACCATTGGTC 63304 || || || || || || | | |||||| ||||| ||||||||| | ||||| ||| Sbjct 93620 GCTGTATTGTTGTACACACGAAGCATTGGTAATAA-ACCATTGGAGTTGCCATTTGTC 93564 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 62774 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 62833 ||||||| || | | ||| | || ||||| || || || ||||| || ||||||||| Sbjct 95789 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 95730 Query 62834 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 62893 || || |||||||| |||||||| ||||||| ||||| || || || |||| ||| Sbjct 95729 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTAGAGCATATATGGGGTA 95670 Query 62894 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 62928 ||||| || | |||||||| || || || | ||| Sbjct 95669 CCAGTCTCTGTTTGAGATTCAATGATGGCATACCA 95635 Score = 95.1 bits (104), Expect = 2e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||| || || ||||||||||| || || || ||||| ||||||| || ||||| | | Sbjct 92218 TTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGTGT 92159 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63110 ||| || || || | | || | ||||| ||||||||||| ||||| || || ||| | Sbjct 92158 CCAGTCACCATCGGCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGGGC-ATAGA 92100 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63141 |||| ||||| | ||| |||||||| || || Sbjct 92099 ATAGGTCTCTAGCTCTCTGTTCCTCCTTGCC 92069 >seq129531 Length=564 Score = 185 bits (204), Expect = 1e-41 Identities = 274/386 (71%), Gaps = 7/386 (2%) Strand=Plus/Minus Query 32645 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 32704 |||||| ||||||| ||| || || |||||||| |||||||||||||| || || | ||| Sbjct 384 ATGTTTGAACATCAGACAGGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTC 325 Query 32705 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 32764 || || || || || || ||||| || || || || || ||||| || || | ||||| Sbjct 324 ATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCAAA 265 Query 32765 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC 32824 || || || ||||| || || |||||||| || || |||| | || ||| | | Sbjct 264 GGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTGCCAAAGTC 205 Query 32825 GGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881 |||||||| | ||||| | ||||| | || ||||| | || || ||||| Sbjct 204 TGCGCTGTCGCTACTGATCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCATGGCAT 145 Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 32941 ||||| | ||||| ||||| || | | | | | |||||| | ||||| || || Sbjct 144 GGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTGGATCTTTGATGTATGTGTCGAT 85 Query 32942 CA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 | || || ||||||||| || || ||||||||||| || || || || |||||||| Sbjct 84 GAGTAATGA--ATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAA 27 Query 33000 CATCTAGCCTCGGTAATCTGTACTTC 33025 || || ||||| | |||||| ||||| Sbjct 26 CACCTTGCCTCTGCAATCTGCACTTC 1 >seq289945 Length=532 Score = 167 bits (184), Expect = 3e-36 Identities = 260/371 (70%), Gaps = 3/371 (1%) Strand=Plus/Minus Query 61880 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 61939 || || || || ||||| ||||| || ||||| |||||| | | || |||||||| Sbjct 381 GTGCGAAGGTAATACATACCCGTCTTCAGACCCGATCTCCATGCAAAGAAGTGCATACTG 322 Query 61940 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 61999 ||||| ||| ||| | || || || || || ||||| | |||||||| ||||| ||| Sbjct 321 GTTAGCTTGCCATAGTTTGGTTCAGCAATGTGAATATTAAGTGATTGACTCTGATCAATG 262 Query 62000 AAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTT 62059 | || || | ||| ||||||| | |||| ||||| |||| || ||||||| ||| Sbjct 261 TATGCACCGCGGTCAACAGCCATCTGAATAACAGTCTTCTGTGAGATCTCCCAAACAGTC 202 Query 62060 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCT 62116 ||||| | | ||| || || ||||| | || | |||||||| |||||| | Sbjct 201 TTATACAATGCCTTGATGTCATCTGGGATTGATGGAATGTTCTGAATAGATCCAGAGTGA 142 Query 62117 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62176 || || | | ||||||| ||||||||| ||| | | ||||| | | ||||| Sbjct 141 GCAATGAGCATATTCTTCATCTCATCAGACCACAGACCCATGTCGGTAAGGTCCCTAAGA 82 Query 62177 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62236 ||||| |||| || || ||||| ||||| || | || | || ||||| ||||||||| Sbjct 81 AGATGATGATTGACGACCTGAAACTCTCCTGAAAGCACACGACGCGTGTAGATATTACTG 22 Query 62237 GTATACGGTTC 62247 || ||||| || Sbjct 21 GTGTACGGCTC 11 >seq289887 Length=335 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||| || || ||||||||||| || || || ||||| ||||||| || ||||| | | Sbjct 185 TTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGTGT 244 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63110 ||| || || || | | || | ||||| ||||||||||| ||||| || || ||| | Sbjct 245 CCAGTCACCATCGGCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGGGC-ATAGA 303 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63141 | ||||||| | ||| |||||||| || || Sbjct 304 ACAGATCTCGAGCTCTCTGTTCCTCCTTGCC 334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631075342402400