Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq295142 316 2e-81 seq129531 170 2e-37 seq256343 122 1e-22 seq205252 93.3 5e-14 seq36655 93.3 5e-14 >seq295142 Length=2525 Score = 316 bits (350), Expect = 2e-81 Identities = 609/881 (69%), Gaps = 14/881 (2%) Strand=Plus/Plus Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 |||||||| || || || || |||||||| || ||||||||||||| || || | ||| Sbjct 1509 TGGTATTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCTTCCAGCGAGAT-GTTTTC 1567 Query 92866 ACT--AGT-GATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAA-CTCGTACAAT- 92920 | ||| || ||| |||| | | || | ||||| || | |||| ||| |||| Sbjct 1568 CATGAAGTCGAATGGGTTCTCGACATTCCAGATCTTTTTACAG-TCAAGCTCA-ACAAGC 1625 Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA 92980 || || || |||||||| || ||||| ||| | | |||||| || | ||| Sbjct 1626 AACCTGTCGGCTACAAACTCGATGTAGGTCTTCATGAGGCCGGCATTCATACCGATGAGA 1685 Query 92981 CGTACAGG-TAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 | |||| ||||||||| |||| ||| || | ||||| ||| ||||| | | ||| Sbjct 1686 -GAGCAGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACCGCTTCCCTGATGAT 1744 Query 93040 TTCTATTACTCTACTATTTGGTGGTTT-TTGTACGACATAATTGTACATTAAGCACGCAA 93098 | || | | | ||| || |||| || || ||| |||| | || |||| Sbjct 1745 CCCCTGGACATGAGCTTCCGATGGCTTGTTGTT-GAGATGCTTGAACATCAGACATGCAA 1803 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGT 93157 ||||| || | ||| ||||||| || | || | ||||| ||| || | ||||| Sbjct 1804 AGTCGCAGTGAAGACCCTCGTCTC-TGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGC 1862 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | ||| ||||||||||||||||| || |||| ||||| ||| || || || || || Sbjct 1863 ATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGAGAAGAAGATGCCC 1922 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277 || || ||||| || || || | | | |||| | |||| | || |||||||| Sbjct 1923 TCTACTGCTGCGAAAGCAACGACCCTTGTACCAAAGTCTGCGCTGTCGCTACTGATCCAG 1982 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 | | ||||| | ||||| || | | ||| || | || || | || || || ||| Sbjct 1983 TCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCTCAACGGCATTGAAGAGG 2042 Query 93338 TAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAA 93397 ||||||| || | |||||| |||||||| ||||| | | ||||||||||| || Sbjct 2043 TAATCTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGTAATGAATACATTTCTGAG 2102 Query 93398 TGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACT 93457 |||| || || |||||||| ||||| ||||||||||| || || || | ||||||||| Sbjct 2103 TGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTCGCCTCTGCAATCTGCACT 2162 Query 93458 TCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517 ||||| ||| || || || | || |||||||| ||||||||| ||| || || ||| Sbjct 2163 TCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCATCGCTTGCAGCGAAGAAA 2222 Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGA 93577 || | | |||| || || || |||||| ||| | ||||| |||||| | | Sbjct 2223 GCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTGGCCCAATGGTCCAAG 2282 Query 93578 TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATA 93637 ||||| ||||||||||| || ||| | ||||| || ||||| || || || ||||| | Sbjct 2283 TCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCCGCCTTCTTGTAGAAT 2342 Query 93638 TCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 | ||| ||||| |||||||| || || || |||||||| || Sbjct 2343 TGCCAGATGTCATGATATTGGATGGGGAAGATGACAAAGCG 2383 >seq129531 Length=564 Score = 170 bits (188), Expect = 2e-37 Identities = 268/381 (70%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATT 93138 ||| |||| | || ||||||||| || | ||| ||||||| || | || | ||||| Sbjct 380 TTGAACATCAGACAGGCAAAGTCGCAGTGAAGACCCTCGTCTC-TGCTGATGAGTTCATT 322 Query 93139 GCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACT 93198 ||| || | ||||| | ||| ||||||||||||||||| || || | |||||| Sbjct 321 TGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCAAAGGA 262 Query 93199 ACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 ||| || || || || || || || ||||| || || || | | | | |||| | ||| Sbjct 261 ACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTGCCAAAGTCTGC 202 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 | | || |||||||| | || ||||| | ||||| || | | || || | || Sbjct 201 GCTGTCGCTACTGATCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCATGGCATGGT 142 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 || | || || || |||||||||| || | | |||| |||||||| ||||| | Sbjct 141 CTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTGGATCTTTGATGTATGTGTCGATGAG 82 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 | ||||||||||| || |||| || || |||||||| ||||| ||||||||||| || Sbjct 81 TAATGAATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCT 22 Query 93439 AGCTTCCGTGATCTGCACTTC 93459 || || | ||||||||||| Sbjct 21 TGCCTCTGCAATCTGCACTTC 1 >seq256343 Length=109058 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 ||| || || |||||||| ||||||||| || ||||| ||||| | | |||| || Sbjct 29699 TACCAGGTTCTCATTGACGATACCATCGCTGGCAGCAAAGAAAGCAAGAACATGCGAGAT 29640 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGAC 93594 || || |||||| ||| | ||||| |||||| || ||||| ||||||||||| Sbjct 29639 GAAGTGCCTCTCATTGTCTGTGAGCTTGGCCCAATGTTCCAGGTCTTTGGAAAGATCGAC 29580 Query 93595 TTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATA 93654 || ||| | ||||| || ||||| || || || ||||| | | ||| ||||| ||||| Sbjct 29579 CTCCTCGGCCGTCCAGAAGGATGCCTCGGCCTTCTTGTAGAATTGCCAGATGTCGTGATA 29520 Query 93655 TTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAG 93696 ||| || || || ||||| || || ||||| || |||| Sbjct 29519 TTGGATGGGGAAAATGACGAAGCGCCGGGGGTTCTCCCTTAG 29478 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 |||||||| ||||| | | ||||||||||| || |||| || || |||||||| ||| Sbjct 30497 ATGTATGTGTCGATGAGTAATGAATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGG 30438 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || ||||||||||| || || || | |||||||||||||| Sbjct 30437 AACCCGTAGAAACACCTTGCCTCTGCAATCTGCACTTCTTG 30397 >seq205252 Length=316 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCC 93565 || ||||| ||||| | | |||| || || || |||||| ||| | ||||| || Sbjct 315 GCAGCAAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTGGCC 256 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 |||| || ||||| ||||||||||| || ||| | ||||| || || || || || Sbjct 255 CAATGTTCCAGGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGACGCCTCGGCC 196 Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGG 93685 || ||||| | | ||| ||||| |||||||| || || || ||||| || || ||| Sbjct 195 TTCTTGTAGAATTGCCAGATGTCGTGATATTGGATGGGGAAAATGACGAAGCGCCGGGGG 136 Query 93686 TTATCTTTTAG 93696 || || |||| Sbjct 135 TTCTCCCTTAG 125 >seq36655 Length=16638 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 ||||||||| || ||||| || ||||| || | || || | ||||| ||||||||| Sbjct 6023 CTCCATTGCTATCTGGAAGCCATAGAAGCACTTGGCCTCTGGTATCTGAACTTCTTGACT 6082 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 || || || || || || ||||| || |||||||| ||||||||| || ||||| | Sbjct 6083 GAACCTTTCCACAAGGTTCTCATTCACGATACCATCACTTGCTGCAAAGAACGCCAACAC 6142 Query 93526 ATGCTTTATAAAATGTTTCTC 93546 || | | |||||||||||| Sbjct 6143 GTGGGTAACAAAATGTTTCTC 6163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554613908436560