Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq283656 116 3e-21 seq233793 93.3 4e-14 seq177272 86.0 5e-12 >seq283656 Length=776 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 || ||||| || || || ||||| |||| || || |||||| ||| ||||| | || Sbjct 775 GTGAAAACATTGACGGGGAAAACCATCACCCTCGAGGTGGAACCCAGTGATACTATTGAA 716 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 || | || ||||||||||||||||| ||||| || |||||||| || || || || Sbjct 715 AATGTAAAGGCCAAAATTCAAGACAAGGAAGGTATCCCTCCCGATCAGCAGCGCCTGATC 656 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 || |||||||| ||| | || ||| |||||| | || || ||||| || || || || Sbjct 655 TTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCTGACTACAATATCCAGAAGGAG 596 Query 22411 TCCACCATACATTTAGT 22427 |||||| | || || || Sbjct 595 TCCACCCTCCACTTGGT 579 >seq233793 Length=42987 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||||||||| || || | | Sbjct 13244 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 13185 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | | |||| | ||||||||||||| || ||||| || ||||| Sbjct 13184 GACACCATCGAGAATGTAAGGCAAAGA-TTCAAGACAAGGAAGGCATTCCCCCTGATCAG 13126 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| || | || ||| |||||| | || || |||||| Sbjct 13125 CAGCGTCTCATCTTCGCTGGCAAGCAACTGGAAGATGGCCGCACTCTGTCAGACTACAAC 13066 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||| | ||| | | | || |||||| Sbjct 13065 ATCCAGAAGGAGTCAACTCTCCATCTTGTTCTCAGGCTCCGTGGAGGT 13018 >seq177272 Length=310 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || ||||||| || || || | | Sbjct 238 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT 179 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| |||||||||||||| || ||||| || ||||| Sbjct 178 GACACCATCGAGAATGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCCCCTGATCAG 119 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| || | || || |||||| | || || |||||| Sbjct 118 CAGCGTCTCATCTTCGCTGGCAAGCAACTGGAAGACGGCCGCACTCTATCAGACTACAAC 59 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 58 ATCCAGAAGGAGTCAAC 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418076768274610