Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq295142 286 7e-72 seq129531 239 8e-58 seq256343 138 2e-27 seq305029 129 1e-24 >seq295142 Length=2525 Score = 286 bits (316), Expect = 7e-72 Identities = 589/862 (68%), Gaps = 23/862 (3%) Strand=Plus/Minus Query 42294 CAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATT 42353 || ||||||||| | |||||||||||| || ||| |||||| ||||||||| | Sbjct 2356 CATGACATCTGGCAATTCTACAAGAAGGCGGAGGCATCCTTCTGGACGGCCGAGGAGGTC 2297 Query 42354 GACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTC 42413 || || |||| ||| || | |||| || | || || || | | ||| || Sbjct 2296 GATCTTTCCAAAGACTTGGACCATTGGGCCAAGCTCACAGACAATGAGAGGCACTTCATC 2237 Query 42414 AAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACC 42473 | | || || |||||||| || || || || |||||||||||| ||| Sbjct 2236 TCGCATGTTCTTGCTTTCTTCGCTGCAAGCGATGGTATTGTCAATGAGAACTTGGTTGAA 2177 Query 42474 AGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCC 42533 ||||| | |||| |||||| |||||| | || |||||||| |||||||| || Sbjct 2176 AGGTTTAGCCAAGAAGTGCAGATTGCAGAGGCGAGGTGTTTCTACGGGTTCCAGATTGCA 2117 Query 42534 ATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCC 42593 || || ||| | ||||| || |||| | ||| || |||| |||||| ||| | Sbjct 2116 ATTGAAAACATCCACTCAGAAATGTATTCATTACTCATCGACACATACATCAAAGATTCA 2057 Query 42594 G-TC-GAGCG-TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAG 42650 | || ||| | | || || ||||| ||| | ||||| ||||| || ||| ||||| Sbjct 2056 GCTCAGAGAGATTAC---CTCTTCAATGCCGTTGAGACCATGCCGTGTGTCACCAAGAAA 2000 Query 42651 GCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC---GCAACGTTCGGCGAGAGGCTG 42707 ||| | |||||||| |||||||| ||| |||| ||| || || ||| | Sbjct 1999 GCGCAATGGGCGCTGGACTGGATC---AGTAGCGACAGCGCAGACTTTGGTACAAGGGTC 1943 Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || || || | || || |||||||||||||||||||| |||| ||| | ||||||||| Sbjct 1942 GTTGCTTTCGCAGCAGTAGAGGGCATCTTCTTCTCGGGTTCCTTTGCCGCAATCTTCTGG 1883 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | |||| | |||||| || || |||||||| || |||||||||||||| || Sbjct 1882 CTCAAGAAACGAGGTCT-GATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGA 1824 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 |||||| || || | |||||||| || || ||||| | || |||| ||||||| Sbjct 1823 CGAGGGTCTTCACTGCGACTTTGCATGTCTGATGTTC---AAGCATCTCAACAACAAGCC 1767 Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCT 42946 ||| | | | |||| || ||||||| ||| || || ||||||| |||||||||| Sbjct 1766 ATCGGAAGCTCATGTCCAGGGGATCATCAGGGAAGCGGTTAAGATCGAACAGGAGTTCCT 1707 Query 42947 CACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006 ||| | | || ||| || || |||| ||||| || ||||||| | ||||| Sbjct 1706 GACGGACGCTCTACCCTGCTCTCTCATCGGTATGAATGCCGGCCTCATGAAGACCTACAT 1647 Query 43007 CCAGTACGTCGCCGAC-CATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGC 43065 | ||| || |||||| | | ||| || | | | | ||| | | | Sbjct 1646 CGAGTTTGTAGCCGACAGGTTGCTTGTTGAGCTTGACTGTAAAAAG-ATCTGGA--ATGT 1590 Query 43066 CGTG--CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 || | ||| |||||||| ||||| ||||||||| |||| || ||||| ||||| || || Sbjct 1589 CGAGAACCCATTCGACTTCATGGAAAACATCTCGCTGGAAGGAAAGACGAACTTCTTTGA 1530 Query 43124 GAAGCGCGTCGCCGACTACCAG 43145 |||| |||| || |||||| Sbjct 1529 GAAGAAGGTCGGTGAATACCAG 1508 >seq129531 Length=564 Score = 239 bits (264), Expect = 8e-58 Identities = 376/529 (71%), Gaps = 17/529 (3%) Strand=Plus/Plus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||| | || |||||||| |||||||| || || || ||| | ||||| || |||| Sbjct 16 GAGGCAAGGTGTTTCTACGGGTTCCAGATTGCAATTGAAAACATCCACTCAGAAATGTAT 75 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCG-TC-GAGCG-TAACGGGCTGTTCAAG 42617 | ||| || |||| |||||| ||||| | || ||| | | || || ||||| Sbjct 76 TCATTACTCATCGACACATACATCAAAGATCCAGCTCAGAGAGATTAC---CTCTTCAAT 132 Query 42618 GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG 42677 ||| | ||||| ||||| ||| ||| ||||| || | |||||| | |||||||| Sbjct 133 GCCGTTGAGACCATGCCATGCGTCACCAAGAAAGCACAATGGGCGTTGGACTGGATC--- 189 Query 42678 AGTCCCGAC---GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATC 42734 ||| |||| ||| || ||| ||| | || || || | || || ||||||||| Sbjct 190 AGTAGCGACAGCGCAGACTTTGGCACAAGGGTCGTTGCTTTCGCAGCAGTAGAGGGCATC 249 Query 42735 TTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGG 42793 ||||||||||| |||| || | ||||||||||||||| | |||| | |||||| || Sbjct 250 TTCTTCTCGGGTTCCTTTGCTGCGATCTTCTGGCTCAAGAAACGAGGTCT-GATGCCAGG 308 Query 42794 ACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTG 42853 || |||||||| || |||||||||||||| |||||||| || || | ||||||||||| Sbjct 309 GCTTACCTTCTCAAATGAACTCATCAGCAGAGACGAGGGTCTTCACTGCGACTTTGCCTG 368 Query 42854 CCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCAT 42913 || ||||| | || |||| ||||||| ||| | | | |||| || ||||| Sbjct 369 TCTGATGTTC---AAACATCTCAACAACAAGCCATCGGAAGCTCATGTCCAGGGGATCAT 425 Query 42914 CACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGT 42973 || ||| || || ||||||| |||||||||| ||| | | || ||| || || | Sbjct 426 CAGGGAAGCGGTCAAGATCGAACAGGAGTTCCTGACGGACGCCCTACCCTGCTCTCTCAT 485 Query 42974 CGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 ||| ||||| || ||||||| | |||||| ||| || |||||| Sbjct 486 CGGTATGAATGCCGGCCTCATGAAGACCTACATCGAGTTTGTGGCCGAC 534 >seq256343 Length=109058 Score = 138 bits (152), Expect = 2e-27 Identities = 169/227 (74%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| ||| | ||||| ||||| ||| ||| ||||| || | |||||| | || Sbjct 31218 CTCTTCAATGCCGTTGAGACCATGCCATGCGTCACCAAGAAAGCACAATGGGCGTTGGAC 31277 Query 42669 TGGATCGAGAGTCCCGAC---GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 |||||| ||| |||| ||| || ||| ||| | || || || | || || Sbjct 31278 TGGATC---AGTAGCGACAGCGCAGACTTTGGCACAAGGGTCGTTGCTTTCGCAGCAGTA 31334 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGTGTC 42784 |||||||||||||||||||| |||| || | ||||||||||||||| | |||| | Sbjct 31335 GAGGGCATCTTCTTCTCGGGTTCCTTTGCTGCGATCTTCTGGCTCAAGAAACGAGGTCT- 31393 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 |||||| || || |||||||| || |||||||||||||| ||||||| Sbjct 31394 GATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGACGAGG 31440 >seq305029 Length=127772 Score = 129 bits (142), Expect = 1e-24 Identities = 300/450 (67%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 244724 TACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTG 244783 |||| || ||||| || || ||||||||||| |||||||| |||| || || || || Sbjct 94076 TACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTTCCCAAGTTTTGTTGGTTA 94017 Query 244784 GACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCG 244843 ||| ||| || ||||||||| ||||| | || || ||||| || | Sbjct 94016 CTCTTCCTGTTACAATGGTCCTTGTACAGCATATATGGGGTACCAGTCTCTGTTTGAGAT 93957 Query 244844 ACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCC 244903 | | || | | ||| || || ||||| | ||| | | | |||| || ||| | Sbjct 93956 TCAATGATGGCATACCACAGAGCCTGGGCCTTCATTGTCTTCCTACCCTTTCCTTCTTTC 93897 Query 244904 TCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCAC 244963 || || ||| || || || || ||||| || | |||||||| ||||| Sbjct 93896 TCATACTTCTCGTAGAGCTTTTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAGGGCAT 93837 Query 244964 GACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCG 245023 ||||||||||| |||| || || | | | ||||||| ||| ||||| || Sbjct 93836 TCATGAGGGCACATGAGGGTCCAGTCACCATCAGCTTCAACCCTCTTCATAAAGAGATCA 93777 Query 245024 GGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTC 245083 |||||||||||||| | ||| || || | || ||||| || ||| ||| ||||||| Sbjct 93776 GGGATCCAGAGGGCATAGAACAGATCTCGGGCTCTCTGTTCCTCCTTGCCGTGGTTCTTC 93717 Query 245084 CT-CAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGC 245142 | ||| || || || ||| || || | ||||| ||||| | ||||| || | ||| Sbjct 93716 TTACAG-TCTAAGAAATCATGGATATCAGCATGCCATGGCTCTAGGTAGATGGCAAAGGC 93658 Query 245143 GCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 || || ||||| ||||||||||| || || Sbjct 93657 ACCAGGACGCTTATTGCCTCCCTGATCTAC 93628 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 244937 CCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCG 244996 ||||| || | |||||||| ||||| ||||||||||| |||| || || || Sbjct 92205 CCCCAAACGTTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGTGTCCAGTCACCATCG 92146 Query 244997 TCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTC 245056 | | ||||||| ||||||||| || |||||||||||||| | ||| ||||| || | Sbjct 92145 GCTTCAACCCTCTTCATGAAGAGATCAGGGATCCAGAGGGCATAGAATAGGTCTCTAGCT 92086 Query 245057 CTCTGCTCGTCCGAGCCA 245074 ||||| || ||| |||| Sbjct 92085 CTCTGTTCCTCCTTGCCA 92068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940528862153440