Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq295142 152 6e-32 seq129531 131 2e-25 seq256343 111 2e-19 seq158717 96.9 4e-15 >seq295142 Length=2525 Score = 152 bits (168), Expect = 6e-32 Identities = 352/522 (67%), Gaps = 14/522 (3%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| ||||||||||| | | |||||||||||| |||||| || ||| Sbjct 1800 GCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCT 1859 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| ||||| || ||||| | |||||| || || ||| ||||||||||||||||| Sbjct 1860 GGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGAGAAGAAGATG 1919 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG-GAGCGC-GAC-TTTGTGTCA 126223 ||||| || ||||| |||| || | | ||||| |||| | | | || Sbjct 1920 CCCTCTACTGCTGCGAAAGCAACGACCCTTGTACCAAAGTCTGCGCTGTCGCTACTG--- 1976 Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 126283 | ||| | || |||||| ||||| || || || |||||| | ||||| | || | Sbjct 1977 ATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCTCAACGGCATTG 2036 Query 126284 AAGAGTTCCTTCTTTTCTGA--TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATG 126341 ||||| | | | ||||| || |||||||||||| | || |||||| |||||| Sbjct 2037 AAGAGGTAAT--CTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGTAATGAATACA 2094 Query 126342 TTTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCT 126399 |||| ||||| ||||| || ||| ||| || |||||||| | | ||| || Sbjct 2095 TTTCTGAGTGGATGTTTTCA--ATTGCAATCTGGAACCCGTAGAAACACCTCGCCTCTGC 2152 Query 126400 TATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCC 126459 ||||| || || | | ||| | | | | |||||| ||||| |||||| | Sbjct 2153 AATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCATCGCTTGC 2212 Query 126460 AGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCA 126519 ||| || || || || | || | ||||| | | ||||| || | || | ||| Sbjct 2213 AGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTGGCCCA 2272 Query 126520 GTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 | ||| | || || || ||||| |||||||| || ||||| Sbjct 2273 ATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCA 2314 >seq129531 Length=564 Score = 131 bits (144), Expect = 2e-25 Identities = 240/345 (70%), Gaps = 10/345 (3%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| ||||||||||| | | |||||||||||| |||||| || || Sbjct 366 GGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCC 307 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||| ||||| || ||||| | |||||| |||||| ||| ||||||||||||||||| Sbjct 306 TGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCAAAGGAACCCGAGAAGAAGAT 247 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAA 126224 ||||| || ||||| |||| || | | || || | ||| | | | | Sbjct 246 GCCCTCTACTGCTGCGAAAGCAACGA-CCCTTGTGCCAAAGTCTGCGCTGTCGCTACTGA 188 Query 126225 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 126284 ||| | || |||||| || || || || || || || | ||||| | || | | Sbjct 187 TCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCATGGCATGGTCTCAACGGCATTGA 128 Query 126285 AGAGTTCCTTCTTTTCTGA--TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 126342 |||| | | | ||||| ||||||||||||||| | || |||||| |||||| | Sbjct 127 AGAGGTAAT--CTCTCTGAGCTGGATCTTTGATGTATGTGTCGATGAGTAATGAATACAT 70 Query 126343 TTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAA 126385 ||| ||||| ||||| || ||| ||| || |||||||| Sbjct 69 TTCTGAGTGGATGTTTTCA--ATTGCAATCTGGAACCCGTAGAAA 27 >seq256343 Length=109058 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||||||||| |||||| || |||||||| ||||| || |||| Sbjct 31440 CCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCT 31381 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 | | |||||| |||||| ||| ||||||||||||||||| ||||| || ||||| | Sbjct 31380 TGAGCCAGAAGATCGCAGCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAG 31321 Query 126186 CAAAGA 126191 ||| || Sbjct 31320 CAACGA 31315 >seq158717 Length=98905 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 172798 CTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAAC 172857 ||| || | |||||||||||||||||||||||| | ||| |||||| ||||||| ||| Sbjct 67131 CTTACCCCTGAGAGGGAACACACCGTAGTGATCTCTACCGACCACACCAAGACCACTAAC 67072 Query 172858 TGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGA-TTGTG 172916 || || ||||| || ||||| ||||| || | ||| | |||||||| ||| || | Sbjct 67071 AGCCAGAGTCTTGGCTGAATCTCCCTCGGTGAGGATCAAGGTACACTTAGAAGAGTTCTT 67012 Query 172917 CCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACC 172956 | | || || | || ||||| |||| ||| || || || Sbjct 67011 TCCT-CCTGCATCATTGGCATCATCCAGCTTTGGGATGCC 66973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594943323025520