Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq80839 123 2e-23 seq283656 116 4e-21 >seq80839 Length=604 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || ||||| || || |||||||| |||| | |||||| | || Sbjct 216 AAGAACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCTGATAGGGTGCGGCCATC 157 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||||||| || | || | ||||||||||| |||||||| |||||||| || Sbjct 156 TTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGAATACCTTCTTTATC 97 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| ||| | || ||| | ||||| || | || | || Sbjct 96 CTGGATCTTAGCCTTGACATTCTCTATGGTGTCAGAAGGCTCCACCTCAAGGGTGATAGT 37 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || ||||| || ||||| Sbjct 36 CTTGCCCGTCAGGGTCTTCACGAATATCTGCAT 4 >seq283656 Length=776 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 |||||||| | || | || || || || || || ||||| || | | ||||| | Sbjct 573 CTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCCA 632 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| |||||||||||||| | || || |||||||| |||||||| || ||||| || Sbjct 633 TCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGGATACCTTCCTTG 692 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| ||||| ||||||| || | ||||||| || ||||| || | || | | Sbjct 693 TCTTGAATTTTGGCCTTTACATTTTCAATAGTATCACTGGGTTCCACCTCGAGGGTGATG 752 Query 64409 GTCTTGCCGGTCAAAGTTTTTACG 64432 || || || ||||| ||||| ||| Sbjct 753 GTTTTCCCCGTCAATGTTTTCACG 776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497628770705360