Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq305029 84.2 2e-11 >seq305029 Length=127772 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 || ||||||| |||||| || | | || ||||| || || | |||||| | || | Sbjct 93565 ACAAATGGCAACTCCAATGGTTTATTACCAATGCTTCGTGTGTACAACAATACAGCTAGA 93624 Query 94144 TACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGG 94203 || || || ||||| || | | | ||| | || || |||| || ||||| ||| Sbjct 93625 TATGTAGATCAGGGAGGCAATAAGCGTCCTGGTGCCTTTGCCATCTACCTAGAGCCATGG 93684 Query 94204 CACGCGGACGTGCAGGCTTTCATCGACCTGCGA-AAGAACCACGGCAACGATCTGGAGAG 94262 || || || | || | |||| | ||| || | |||||||||||||| || |||| Sbjct 93685 CATGCTGATATCCATGATTTCTTAGAC-TGTAAGAAGAACCACGGCAAGGAGGAACAGAG 93743 Query 94263 GGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 ||| |||| || ||||| || |||||| | || || || |||||||| Sbjct 93744 AGCCCGAGATCTGTTCTATGCCCTCTGGATCCCTGATCTCTTTATGAA 93791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492727028992240