Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_011202.1 Length=34794 Score E Sequences producing significant alignments: (Bits) Value seq201746 118 2e-22 >seq201746 Length=230 Score = 118 bits (130), Expect = 2e-22 Identities = 156/209 (75%), Gaps = 12/209 (6%) Strand=Plus/Minus Query 6055 ATGCCTTTCATGAGGTTTTCG--TCCATTTGGTCAGAAAACACAAtttttttATTGTCAA 6112 |||||||| |||| | || ||||| |||||||||| ||||| |||| ||||| Sbjct 230 ATGCCTTT---GAGGGTGCCGCATCCATCTGGTCAGAAAG-ACAATCTTTTG--TGTCAG 177 Query 6113 GTTTGGTGGCAAATGATCCATACAGGGCGTTGGATAAAAGTTTGGCAAT-GGATCGCATG 6171 || ||||||||| || || || ||||||||||| | | ||||| || ||| |||| | Sbjct 176 CTTGGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGG 117 Query 6172 G--TTTGGTTCTTTTCCTTGTCCGCGCGCTCTTTGGCGGCGATGTTGAGTTGGACATACT 6229 | ||||||| ||| | || |||||||| ||||| |||||||| || || || || | Sbjct 116 GGTTTTGGTT-TTTGCGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATT 58 Query 6230 CGCGTGCCAGGCACTTCCATTCGGGGAAG 6258 |||| || | |||| ||||||||| ||| Sbjct 57 CGCGCGCAACGCACCGCCATTCGGGAAAG 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110792876925968