Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq172955 100 3e-16 seq33451 98.7 1e-15 seq305346 96.9 3e-15 seq233793 96.9 3e-15 seq15040 93.3 4e-14 seq177272 91.5 1e-13 seq80839 84.2 2e-11 >seq172955 Length=397 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||| ||||||||||| | ||| || ||||||||||| || || | Sbjct 290 TTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCGAGTTGCTTGCCAG 231 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 |||| |||||||| || || || || || ||||| ||||| ||| | |||| ||| Sbjct 230 CGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTC-CTGAATCTTTGCCTTT 172 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | ||||||| | | ||| ||||| | || | || || ||||| || || Sbjct 171 ACATTCTCGATGGTGTCGCTTGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTC 112 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 111 TTGACGAAGATCTGCAT 95 >seq33451 Length=524 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA--GTCCTCGAGTTGTTTACC 138476 |||||||||| || ||||||||||| | |||| |||| |||||||||||| || || Sbjct 335 TTGACTCCTTCTGGATGTTGTAGTC--TGATAGAGTGCGACCGTCCTCGAGTTGCTTGCC 278 Query 138477 GGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-T 138535 | |||| |||||||| || || || || || ||||| ||||| ||| || |||| Sbjct 277 AGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTC-CTGAATTCTTGTCC 219 Query 138536 TTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAG 138595 ||| | || | |||||| | | ||| ||||| | || | || || ||||| || | Sbjct 218 TTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTAAGGG 159 Query 138596 TTTTTACAAAAATCTGCAT 138614 | || || || |||||||| Sbjct 158 TCTTGACGAAGATCTGCAT 140 >seq305346 Length=360 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||| ||||||||||| | ||| || ||| |||||||| || || | Sbjct 123 TTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCTTCGAGTTGCTTGCCAG 182 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 | |||| |||||||| || || || || || ||||| ||||| ||| | |||| ||| Sbjct 183 CAAAGATGAGACGCTGCTGATCAGGGGGGATGCCTTCCTTGTC-CTGAATCTTTGCCTTT 241 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | |||||| | | ||| ||||| | || | || || || || || || Sbjct 242 ACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGTC 301 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 302 TTGACGAAGATCTGCAT 318 >seq233793 Length=42987 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||| ||||||||||| | ||| || |||||||||||| || || | Sbjct 12822 TTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTGCCAG 12881 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 |||| |||||||| || || || || || ||||| ||||| ||| | |||| ||| Sbjct 12882 CGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTC-CTGAATCTTTGCCTTT 12940 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | |||||| | | ||| ||||| | || | || || || || || || Sbjct 12941 ACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGTC 13000 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 13001 TTGACGAAGATCTGCAT 13017 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||| || |||||||||||| || || | Sbjct 11567 GACTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCG 11626 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| |||||||| || || || || || ||||| ||||| ||| | |||| |||| Sbjct 11627 AAGATGAGACGCTGCTGATCAGGGGGGATGCCTTCCTTGTC-CTGAATCTTTGCCTTTAC 11685 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | | ||| ||||| | || | || || || || || || || Sbjct 11686 GTTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGTCTT 11745 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 11746 GACGAAGATCTGCAT 11760 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || ||||||||||| | ||| || |||||||||||| || || | Sbjct 13277 TTGACTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTGCCAG 13336 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 |||| |||||||| || || || || || ||||| ||||| ||| | || | ||| Sbjct 13337 CGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTC-CTGAATCTTAGCCTTT 13395 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | |||||| | | ||| ||||| | || | || || || || || || Sbjct 13396 ACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGTC 13455 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 13456 TTGACGAAGATCTGCAT 13472 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || ||||||||||| | ||| || |||||| ||||| || || | Sbjct 13505 TTGACTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCCAGTTGCTTGCCAG 13564 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 |||| |||||||| || || || || || ||||| ||||| ||| | |||| ||| Sbjct 13565 CGAAGATGAGACGCTGCTGATCAGGGGGGATGCCTTCCTTGTC-CTGAATCTTTGCCTTT 13623 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | |||||| | | ||| ||||| | || | || || || || || || Sbjct 13624 ACGTTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTTATGGTCTTGCCTGTGAGGGTC 13683 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 13684 TTCACGAAGATCTGCAT 13700 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/196 (70%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || ||||||||||| || ||| || || || ||||| || || | Sbjct 13050 TTGACTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGGCCATCTTCCAGTTGCTTGCCAG 13109 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| |||||||| || || || || || ||||| ||||| ||| | |||| ||| Sbjct 13110 CGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTC-TTGAATCTTTGCCTTA 13168 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||| | | ||| ||||| | || | || || || || || || | Sbjct 13169 CATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGTCT 13228 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 13229 TGACGAAGATCTGCAT 13244 >seq15040 Length=705 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| | ||| || |||||||||||| || || | Sbjct 515 GATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCG 456 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 ||||||||||||| || || || || || ||||| ||||| ||| | |||| |||| Sbjct 455 AAGATTAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTC-CTGAATCTTTGCCTTTAC 397 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | | ||| ||||||| || | || || || || || || || Sbjct 396 ATTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTTGCCTGTGAGGGTCTT 337 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 336 GACGAAGATCTGCAT 322 >seq177272 Length=310 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || ||||||||||| | ||| || ||| || ||||| || || | Sbjct 43 TTGACTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCTTCCAGTTGCTTGCCAG 102 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 |||| |||||||| || || || || || ||||| ||||| ||| | |||| ||| Sbjct 103 CGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTC-TTGAATCTTTGCCTTT 161 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | |||||| | | ||| ||||||| || | || || ||||| || || Sbjct 162 ACATTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTC 221 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 222 TTGACGAAGATCTGCAT 238 >seq80839 Length=604 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | |||| ||||| || ||||||||||| | Sbjct 230 CCACCACGTAGACGAAGAACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTC--TG 173 Query 138448 ATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 |||| ||| || || || || || || | |||| | |||||| ||||| |||| Sbjct 172 ATAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAG 113 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | ||||||||||| || ||| || || | | || | |||||| | | ||||| Sbjct 112 GAATACCTTCTTTATCCTGGATCTTAGCCTTGACATTCTCTATGGTGTCAGAAGGCTCCA 53 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || ||||| || || || || |||||||| Sbjct 52 CCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAATATCTGCAT 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494260018435680