Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq283656 96.9 2e-15 seq233793 91.5 1e-13 seq305346 87.8 1e-12 seq172955 87.8 1e-12 seq15040 87.8 1e-12 >seq283656 Length=776 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || | || | || || || ||||| || || || || || ||||| || Sbjct 560 GCCACCACGGAGCCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGA 619 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| | | | ||||| | || ||||| ||| | |||| ||||| || ||| || Sbjct 620 CAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCGGGAGG 679 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| ||||||| |||||| |||| |||||||| || ||| || Sbjct 680 GATACCTTCCTTGTCTTGAATTTTGGCCTTTACATTTTCAATAGTATCACTGGGTTCCAC 739 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTAC 15164 || | ||| |||||||| || |||| ||||| || Sbjct 740 CTCGAGGGTGATGGTTTTCCCCGTCAATGTTTTCAC 775 >seq233793 Length=42987 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| || || || || ||||| |||||||| || ||| | | |||| || Sbjct 12808 AACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTC 12867 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| ||||||||| | || | |||||| || ||| ||||| ||||||||||| Sbjct 12868 GAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 12927 Query 15087 AAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||| ||||| |||||| | || || || || || || || || | || ||||| | Sbjct 12928 AATCTTTGC-CTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCT 12986 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||||| || || || || || || |||||| Sbjct 12987 TGCCTGTGAGGGTCTTGACGAAGATCTGCATA 13018 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | ||| | ||| || ||||| || || || |||||||| || Sbjct 11534 CCACCACGAAGCCTGAGAACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAT 11593 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| || | ||| ||||||||| | || | |||||| || || || Sbjct 11594 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGG 11653 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| ||| ||||| ||||| | || || || || || || || Sbjct 11654 ATGCCTTCCTTGTCCTGAATCTTTGC-CTTTACGTTCTCGATGGTGTCACTTGGCTCAAC 11712 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||| || ||||| || || || || || || |||||| Sbjct 11713 CTCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCATA 11761 >seq305346 Length=360 Score = 87.8 bits (96), Expect = 1e-12 Identities = 173/252 (69%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || |||| || | ||| | ||| || || || || ||||| |||||||| || Sbjct 92 CCTCCACGCAGCCTGAGAACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAT 151 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | ||||||| | ||| |||||||| | || | |||||| || || || Sbjct 152 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGG 211 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| ||| ||||| |||||| | || || || || || || || Sbjct 212 ATGCCTTCCTTGTCCTGAATCTTTGC-CTTTACATTCTCGATGGTGTCACTTGGCTCAAC 270 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA-----TTTGAA 15183 || | || ||||| || ||||| || || || || || || |||||| |||||| Sbjct 271 CTCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCATACTGACTTTGAA 330 Query 15184 A-TAAATTTTTT 15194 | || | ||||| Sbjct 331 ATTAGAGTTTTT 342 >seq172955 Length=397 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| || || || || ||||| |||||||| || ||| | | | || || Sbjct 304 AACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTC 245 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| ||||||||| | || | |||||| || ||| ||||| ||||||||||| Sbjct 244 GAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 185 Query 15087 AAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||| ||||| |||||| | || || || ||||| || || || | || ||||| | Sbjct 184 AATCTTTGC-CTTTACATTCTCGATGGTGTCGCTTGGCTCAACCTCAAGAGTGATGGTCT 126 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || || || || || |||||| Sbjct 125 TGCCAGTGAGGGTCTTGACGAAGATCTGCATA 94 >seq15040 Length=705 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| || ||||| || || || |||||||| || ||| | | |||| || Sbjct 531 AACGAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTC 472 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || |||||| | || | |||||| || ||| ||||| ||||||||||| Sbjct 471 GAGTTGCTTTCCAGCGAAGATTAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 412 Query 15087 AAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||| ||||| |||||| | || || || || || || || || | || ||||| | Sbjct 411 AATCTTTGC-CTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCT 353 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||||| || || || || || || |||||| Sbjct 352 TGCCTGTGAGGGTCTTGACGAAGATCTGCATA 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355986001332290