Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq172955 89.7 5e-13 seq15040 89.7 5e-13 seq283656 87.8 2e-12 seq233793 84.2 2e-11 seq305029 82.4 7e-11 >seq172955 Length=397 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || ||||| || | ||||| ||| || || || || ||| Sbjct 291 GTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCGAGTTGCTTGCCA 232 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 ||| |||| | |||||||||||||| || ||||| ||||||||| ||| | | || ||| Sbjct 231 GCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCC-TGAATCTTTGCCTT 173 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| |||||| | ||| || || | || | || ||||| || || || Sbjct 172 TACATTCTCGATGGTGTCGCTTGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGT 113 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 112 CTTGACGAAGATCTGCAT 95 >seq15040 Length=705 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || || || ||||| || | ||||| || || || || |||||| Sbjct 518 GTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTTCCA 459 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 ||| |||| | |||||||||||||| || ||||| ||||||||| ||| | | || ||| Sbjct 458 GCGAAGATTAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCC-TGAATCTTTGCCTT 400 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| |||||| | ||| || |||| || | || ||||| || || || Sbjct 399 TACATTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTTGCCTGTGAGGGT 340 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 339 CTTGACGAAGATCTGCAT 322 >seq283656 Length=776 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| || || |||||||| || || ||||| ||| || Sbjct 578 CACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCCATCTTC 637 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || || ||| |||||| ||||||||||||||||| || || |||||||| Sbjct 638 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGGATACCTTCCTTGTCTTG 697 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||||| ||| | | ||| | || || | || || |||| ||| | ||||| Sbjct 698 AATTTTGGCCTTTACATTTTCAATAGTATCACTGGGTTCCACCTCGAGGGTGATGGTTTT 757 Query 127084 GCCGGTCAGAGTTTTTAC 127101 || |||| ||||| || Sbjct 758 CCCCGTCAATGTTTTCAC 775 >seq233793 Length=42987 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || ||||| || | ||||| || || || || || ||| Sbjct 12821 GTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTGCCA 12880 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 ||| |||| | |||||||||||||| || ||||| ||||||||| ||| | | || ||| Sbjct 12881 GCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCC-TGAATCTTTGCCTT 12939 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| |||||| | ||| || || | || | || ||||| || || || Sbjct 12940 TACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGT 12999 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 13000 CTTGACGAAGATCTGCAT 13017 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || || || || ||| Sbjct 13049 GTTGACTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGGCCATCTTCCAGTTGCTTGCCA 13108 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||||| || || ||||| ||||||| | ||| | | ||| | Sbjct 13109 GCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGT-CTTGAATCTTTGCCTT 13167 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | || | || ||||| || || || Sbjct 13168 ACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGTC 13227 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 13228 TTGACGAAGATCTGCAT 13244 >seq305029 Length=127772 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 146678 AATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGT 146737 |||||| || ||||| | || ||||| ||||| |||||| | ||||| |||| ||||| Sbjct 95773 AATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTTCCCAAGTTTTGTTGGT 95714 Query 146738 TACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 |||| | |||| || |||||||||||||||| || || Sbjct 95713 TACTCTTCCTGTTACAATGGTCCTTGTAGAGCATATATGG 95674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473582189934560