Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq80839 95.1 1e-14 seq233793 89.7 5e-13 seq172955 89.7 5e-13 seq177272 86.0 6e-12 seq15040 84.2 2e-11 >seq80839 Length=604 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || ||||||||||| ||||| || || || | ||| ||| || Sbjct 212 ACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCTGATAGGGTGCGGCCATCTTCA 153 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | ||||| || |||||||| || ||||| ||||||||||| || Sbjct 152 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGAATACCTTCTTTATCCTGG 93 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| |||| |||||| |||| ||| || || || || | || ||| Sbjct 92 ATCTTAGCCTTGACATTCTCTATGGTGTCAGAAGGCTCCACCTCAAGGGTGATAGTCTTG 33 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || || || || |||||| Sbjct 32 CCCGTCAGGGTCTTCACGAATATCTGCATC 3 >seq233793 Length=42987 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| |||||||| | || ||||| || ||||| ||||| ||||| || || || Sbjct 13016 ATACCTCCACGGAGCCTGAGAACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTC- 13074 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| | | | ||| |||| ||| || || ||| | || | || ||||| || | Sbjct 13075 -TGACAGAGTGCGGCCATCTTCCAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAG 13133 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||| || ||||||| | |||| | | || | |||||| | || Sbjct 13134 GGGGAATGCCTTCCTTGTCTTGAA-TCTTTGCCTTACATTCTCGATGGTGTCACTTGGCT 13192 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| | || ||||| || || || || || || || ||||| Sbjct 13193 CAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 13244 >seq172955 Length=397 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| |||||||| | || ||||| || ||||| ||||||||||| || || || Sbjct 324 ATACCTCCACGGAGCCTGAGAACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTC- 266 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| || | ||| || || ||| | || | || ||||| || | Sbjct 265 -TGATAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGG 207 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||| || || ||||| ||| || | || | ||||||| | || Sbjct 206 GGGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCGCTTGGCT 147 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| | || ||||| || || || || || || || ||||| Sbjct 146 CAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 95 >seq177272 Length=310 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| |||||||| | || ||||| || ||||| ||||| ||||| || || || Sbjct 10 ATACCTCCACGGAGCCTGAG-ACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTC- 67 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | || |||| ||| || || ||| | || | || ||||| || | Sbjct 68 -TGATAGAGTGCGGCCGTCTTCCAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAG 126 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||| || |||||||| ||| || | || | |||||| | || Sbjct 127 GGGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCT 186 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || |||||||| | || ||||| || || || || || || || ||||| Sbjct 187 CAACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 238 >seq15040 Length=705 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| |||||||| | || ||||| || || |||||||| ||||| || || || Sbjct 551 ATACCTCCACGGAGCCTGAGAACGAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTC- 493 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | || || | ||| ||||| ||| | || | || ||||| || | Sbjct 492 -TGATAGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCGAAGATTAGACGCTGCTGATCGG 434 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||| || || ||||| ||| || | || | |||||| | || Sbjct 433 GGGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCT 374 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || |||||||| | || ||||| || || || || || || || ||||| Sbjct 373 CAACCTCGAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450179400988240