Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq295142 145 9e-30 seq129531 132 6e-26 seq256343 100 3e-16 seq158717 93.3 5e-14 >seq295142 Length=2525 Score = 145 bits (160), Expect = 9e-30 Identities = 565/872 (65%), Gaps = 22/872 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || |||||| |||||| |||||||| ||||| || || || ||| || ||||| Sbjct 1511 GTATTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCTTCCAGCGAGATGTTTTCCAT 1570 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGTTGGCACCCCAATCTGTTTGAGGAGAC 127349 || || |||||||||| ||||| || | || || | || || || | | Sbjct 1571 GAAGTCGAATGGGTTCTCGACATTCCAGATCTTTTTACAGTC-AAGCTCAACAAGCAACC 1629 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 || | || |||| ||||| ||| | | |||||||||||||| | Sbjct 1630 TGTCGGCTACAAACTCGATGTAGGTCTTCATGAGGCCGGCATTCATACCGATGAGAGAGC 1689 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | || || |||||| | |||| ||| || || | || ||||||| | ||| | | Sbjct 1690 AGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACCGCTTCCCTGATGATCCCCT 1749 Query 127470 GAATAGTGTCCACCCCAGGTCTA-TTGCGTAAAGTCTTGAAGAGTTCCACA-GCAAACTC 127527 | | | || | || | | || ||| | | |||||| | | ||| ||||| || Sbjct 1750 GGACA-TGAGCTTCCGATGGCTTGTTGTTGAGATGCTTGAACA-TCAGACATGCAAAGTC 1807 Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587 ||| ||||||||||| | | |||||||||||| |||||| || |||||||| || Sbjct 1808 GCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATCAG 1867 Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| || ||||| | |||||| || || ||| || || ||||||||||| ||||| || Sbjct 1868 ACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGAGAAGAAGATGCCCTCTAC 1927 Query 127648 ACACGCGAACGCAAATAGACGCTCG--GCAAAGGAGCGGGACTTT--GTATCAAACCACT 127703 ||||| |||| ||| || | ||||| | | || | || | ||| | Sbjct 1928 TGCTGCGAAAGCAA--CGACCCTTGTACCAAAG--TCTGCGCTGTCGCTACTGATCCAGT 1983 Query 127704 TCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTT 127763 || |||||| || || || || || ||| || | ||||| | || | ||||| | Sbjct 1984 CCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCTCAACGGCATTGAAGAGGT 2043 Query 127764 CCTTCTTTTCTGA--TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 127821 | | ||||| || |||||||||||| | || |||||| |||||| |||| Sbjct 2044 AAT--CTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGTAATGAATACATTTCTGA 2101 Query 127822 GTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGT 127879 ||||| ||||| || ||| ||| || |||||||| | | ||| || ||||| Sbjct 2102 GTGGATGTTTTCA--ATTGCAATCTGGAACCCGTAGAAACACCTCGCCTCTGCAATCTGC 2159 Query 127880 ACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAA 127939 || || | | ||| | | | | |||||| ||||| |||||| |||| || Sbjct 2160 ACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCATCGCTTGCAGCGAAG 2219 Query 127940 AACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCG 127999 || || || | || | ||||| | | ||||| || | || | ||| | ||| Sbjct 2220 AAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTGGCCCAATGGTCC 2279 Query 128000 AGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAG 128059 | || || || ||||| |||||||| || ||||| | | |||||||| ||| Sbjct 2280 AAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCCGCCTTCTTGTAG 2339 Query 128060 AGTTCCCAGAGGTGGGGATACTTCAGGGGGAA 128091 | || ||||| || |||| | | |||||| Sbjct 2340 AATTGCCAGATGTCATGATATTGGATGGGGAA 2371 >seq129531 Length=564 Score = 132 bits (146), Expect = 6e-26 Identities = 241/345 (70%), Gaps = 12/345 (3%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| ||||||||||| | | |||||||||||| |||||| || ||| Sbjct 365 GCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCT 306 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| ||||| || ||||| | |||||| |||||| ||| || || ||||||||||| Sbjct 305 GGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCAAAGGAACCCGAGAAGAAGATG 246 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCG-GCAAAGGAGCGGGACTTTG-TATCAA 127697 ||||| || ||||| |||| ||| || | || || | | | | | || | Sbjct 245 CCCTCTACTGCTGCGAAAGCAA--CGACCCTTGTGCCAAAGTCTGCGCTGTCGCTACTGA 188 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 ||| | || |||||| ||||| || || || ||||| | ||||| | || | | Sbjct 187 TCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCATGGCATGGTCTCAACGGCATTGA 128 Query 127758 AGAGTTCCTTCTTTTCTGA--TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 127815 |||| | | | ||||| ||||||||||||||| | || |||||| |||||| | Sbjct 127 AGAGGTAAT--CTCTCTGAGCTGGATCTTTGATGTATGTGTCGATGAGTAATGAATACAT 70 Query 127816 TTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAA 127858 ||| ||||| ||||| || ||| ||| || |||||||| Sbjct 69 TTCTGAGTGGATGTTTTCA--ATTGCAATCTGGAACCCGTAGAAA 27 >seq256343 Length=109058 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||||||||| |||||| || |||||||| ||||| || |||| Sbjct 31440 CCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCT 31381 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 | | |||||| |||||| ||| || || ||||||||||| ||||| || ||||| | Sbjct 31380 TGAGCCAGAAGATCGCAGCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAG 31321 Query 127659 CAA 127661 ||| Sbjct 31320 CAA 31318 >seq158717 Length=98905 Score = 93.3 bits (102), Expect = 5e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 176818 CTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAAC 176877 ||| || | |||||||||||||||||||||||| | ||| |||||| |||||| ||| Sbjct 67131 CTTACCCCTGAGAGGGAACACACCGTAGTGATCTCTACCGACCACACCAAGACCACTAAC 67072 Query 176878 TGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGA-TTGTG 176936 || || ||||| || ||||| ||||| || | ||| | |||||||| ||| || | Sbjct 67071 AGCCAGAGTCTTGGCTGAATCTCCCTCGGTGAGGATCAAGGTACACTTAGAAGAGTTCTT 67012 Query 176937 CCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACC 176976 | | || || | || ||||| |||| ||| || || || Sbjct 67011 TCCT-CCTGCATCATTGGCATCATCCAGCTTTGGGATGCC 66973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611031744461040