Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq295142 181 2e-40 >seq295142 Length=2525 Score = 181 bits (200), Expect = 2e-40 Identities = 564/868 (65%), Gaps = 14/868 (2%) Strand=Plus/Plus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || |||||||| || ||||| ||||| || |||| || || ||||||||| ||||| Sbjct 1521 ACCTTCTTCTCAAAGAAGTTCGTCTTTCCTTCCAGCGAGATGTTTTCCATGAAGTCGAAT 1580 Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763 ||||||| || | || ||| | | | || | | ||||||||||| || ||| Sbjct 1581 GGGTTCTCGACATTCCAGATCTTTTTACAGTCAAGCTCAACAAGCAACCTGTCGGCTACA 1640 Query 159764 AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCT 159823 || ||||||||| | ||| | | || || || | || ||| || || Sbjct 1641 AACTCGATGTAGGTCTTCATGAGGCCGGCATTCATACCGATGAGAGAGCAGGGTAGAGCG 1700 Query 159824 TCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCG 159883 |||| ||| ||||||| || |||| |||||||| | | ||| | |||| | | Sbjct 1701 TCCGTCAGGAACTCCTGTTCGATCTTAACCGCTTCCCTGATGATCCCCTGGACATGAGCT 1760 Query 159884 TACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 | | |||||| || | | ||| |||| || || |||||||||||||| || Sbjct 1761 TCCGATGGCTTGTTGT---TGAGATGCTTGAACATCAGACATGCAAAGTCGCAGTGAAGA 1817 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 |||||||| | ||||| || || || | | | || || ||||| | || || Sbjct 1818 CCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTC 1877 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 |||||||| || || || ||||| | ||| || ||||| ||||| || || || || Sbjct 1878 TTGAGCCAGAAGATTGCGGCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAA 1937 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 || |||| ||| |||||| ||| || | | | |||| ||||||| Sbjct 1938 GCAACGACCCTTGTACCAAAGTCTGCGCTGTCGCTACTGATCCAGTCCAGCGCCCATTGC 1997 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAA----CAATCTGTCCTGCTC 160179 || ||||| | || ||||||||| ||| ||||| || || ||||| | ||| | Sbjct 1998 GCTTTCTTGGTGACACACGGCATGGTCTCAACGGCATTGAAGAGGTAATCTCT-CTGAGC 2056 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 | | ||| ||||| || | || || || |||||||||| ||| | ||||| Sbjct 2057 --TGA-ATCTTTGATGTATGTGTCGATGAGTAATGAATACATTTCTGAGTGGATGTTTTC 2113 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 || || ||||| || ||||||| | ||||||| | |||||| || || | || Sbjct 2114 AATTGCAATCTGGAACCCGTAGAAACACCTCGCCTCTGCAATCTGCACTTCTTGGCTAAA 2173 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 ||||| | ||| || |||| || | || ||| || || |||||||| | || || Sbjct 2174 CCTTTCAACCAAGTTCTCATTGACAATACCATCGCTTGCAGCGAAGAAAGCAAGAACATG 2233 Query 160360 AGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGC 160419 |||||||| || ||||| | | |||| ||| |||| || || ||||| || Sbjct 2234 CGAGATGAAGTGCCTCTCATTGTCTGTGAG---CTTGGCCCAATGGTCCAAGTCTTTGGA 2290 Query 160420 CAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 | ||| ||||| || || |||| || |||| || | ||||| | |||||| Sbjct 2291 AAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCCGCCTTCTTGTAGAATTGCCAGAT 2350 Query 160480 GGCGTGCTCTCTGATCGGAAAAGTGACA 160507 | | || | | ||| || || ||||| Sbjct 2351 GTCATGATATTGGATGGGGAAGATGACA 2378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791946808404640