Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq305029 111 2e-19 seq295142 102 1e-16 seq129531 91.5 2e-13 seq256343 84.2 3e-11 >seq305029 Length=127772 Score = 111 bits (122), Expect = 2e-19 Identities = 336/512 (66%), Gaps = 19/512 (4%) Strand=Plus/Plus Query 111906 ACAAATGGTCAATCAGATGGTATTATT-CCAATGCTTCGCGTATTTAACGCCACAGCGCG 111964 |||||||| | || ||||| ||||| ||||||||||| || | ||| ||||| | Sbjct 93565 ACAAATGGCAACTCCAATGGT-TTATTACCAATGCTTCGTGTGTACAACAATACAGCTAG 93623 Query 111965 CTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCC 112018 |||||| | || | || ||||| || | | || |||| || ||||| Sbjct 93624 ATATGTAGATCAGGGAGGCAATAAGCGTCCT---GGTGCCTTTGCCATCTACCTAGAGCC 93680 Query 112019 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGC 112078 |||||| || |||||| || ||| | || | ||||| || | ||||| Sbjct 93681 ATGGCATGCTGATATCCATGATTTCTTAGACTGTAAGAAGAACCACGGCAAGGAGGAACA 93740 Query 112079 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 112138 | | ||| ||||| |||| || |||||||| || |||||||| |||||||| ||||| Sbjct 93741 GAGAGCCCGAGATCTGTTCTATGCCCTCTGGATCCCTGATCTCTTTATGAAGAGGGTTGA 93800 Query 112139 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCG 112197 | ||| | ||| | ||| | || || | || || || || || || || Sbjct 93801 AGCTGATGGTGACTGGACCCTCATGTGCCCTCATGAATGC-CCTGGCCTA---GAAAACG 93856 Query 112198 T---GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG 112254 | ||| || || |||||| |||||| ||||| ||| ||||| | || | Sbjct 93857 TTTGGGGAGATGAATTTGAAAAGCTCTACGAGAAGTATGAGAAAGAAGGAAAGGGTAGGA 93916 Query 112255 CGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 112314 ||| || || | | ||||| | || || | | |||||||| |||||||||| Sbjct 93917 AGACAATGAAGGCCCAGGCTCTGTGGTATGCCATCATTGAATCTCAAACAGAGACTGGTA 93976 Query 112315 CACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 112374 | ||||||||||| ||||| ||| |||||| |||||||| ||| | || ||||| Sbjct 93977 CCCCATATATGCTGTACAAGGACCATTGTAACAGGAAGAGTAACCAACAAAACTTGGGAA 94036 Query 112375 TGATCAAGAGTTCCAACCTCTGTACAGAAATC 112406 ||||| | ||||| |||||||| ||| Sbjct 94037 CCATCAAATGCAGTAACCTGTGTACAGAGATC 94068 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 112296 TCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 112355 |||||||| ||||||||||| ||||||||||| ||||| ||| |||||| |||||| Sbjct 95653 TCTCAAACAGAGACTGGTACCCCATATATGCTCTACAAGGACCATTGTAACAGGAAGAGT 95712 Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATC 112406 || ||| | || ||||| ||||| | ||||| |||||||| ||| Sbjct 95713 AACCAACAAAACTTGGGAACCATCAAATGCAGTAACCTGTGTACAGAGATC 95763 >seq295142 Length=2525 Score = 102 bits (112), Expect = 1e-16 Identities = 282/426 (66%), Gaps = 20/426 (5%) Strand=Plus/Minus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||| |||||||| ||| || | ||||||||||| |||||| Sbjct 1927 GTAGAGGGCATCTTCTTCTCGGGTTCCTTTGCCGCAATCTTCTGGCTCAAGAAACGAGGT 1868 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAA 102323 || |||||||| || |||||| || || || ||| | |||||||| || ||| Sbjct 1867 CTGATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGACGAGGGTCTTCACTGC 1808 Query 102324 GAGTTTGC-GGTGGAACTTTTCAAATTATTGCGTATTAAACCAACGACTGAGACTATTCA 102382 || ||||| || | | ||||| | | || ||| || | | | || Sbjct 1807 GACTTTGCATGTCTGA-TGTTCAAGCATCTCAACAACAAGCCATCGGAAGCTCATGTCCA 1749 Query 102383 TTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATG 102442 || | | |||||| ||| |||| || ||| ||| | ||| || || || || Sbjct 1748 GGGGATCATCAGGGAAGCGGTTAAGATCGAACAGGAGTTCCTGACGGACGCTCTACCCTG 1689 Query 102443 CGCTCTCATCGGTATGAATTCTG---AAAAGATGTCCGAATATATTGAGTATGTATCTGA 102499 | ||||||||||||||||| | | | || | || || || |||| |||| | || Sbjct 1688 CTCTCTCATCGGTATGAATGCCGGCCTCATGAAGACC---TACATCGAGTTTGTAGCCGA 1632 Query 102500 TAGATTG-TTGAAGCAGATCGGGGTGCCTCCA-----ATTTGGAACTCCAAGAATCCATT 102553 || ||| ||| | || | || || | || ||||| | |||| ||||| Sbjct 1631 CAGGTTGCTTGTTG-AGCT-----TGACTGTAAAAAGATCTGGAATGTCGAGAACCCATT 1578 Query 102554 TGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGG 102613 ||||||||||| ||||| || || || ||||| |||||||| || |||| ||| || Sbjct 1577 CGACTTCATGGAAAACATCTCGCTGGAAGGAAAGACGAACTTCTTTGAGAAGAAGGTCGG 1518 Query 102614 GGACTA 102619 || || Sbjct 1517 TGAATA 1512 >seq129531 Length=564 Score = 91.5 bits (100), Expect = 2e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGG 102262 || ||||| ||||||||||| |||||||| ||| || || | ||||||||||| ||||| Sbjct 238 GTAGAGGGCATCTTCTTCTCGGGTTCCTT-TGCTGCGATCTTCTGGCTCAAGAAACGAGG 296 Query 102263 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCA 102322 ||| |||||||| || |||||| || || || ||| | |||||||| || ||| Sbjct 297 TCTGATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGACGAGGGTCTTCACTG 356 Query 102323 AGAGTTTGC 102331 || ||||| Sbjct 357 CGACTTTGC 365 >seq256343 Length=109058 Score = 84.2 bits (92), Expect = 3e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGG 102262 || ||||| ||||||||||| |||||||| ||| || || | ||||||||||| ||||| Sbjct 31332 GTAGAGGGCATCTTCTTCTCGGGTTCCTT-TGCTGCGATCTTCTGGCTCAAGAAACGAGG 31390 Query 102263 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 ||| |||||||| || |||||| || || || ||| | ||||||| Sbjct 31391 TCTGATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGACGAGG 31440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618237750971680