Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq305029 82.4 9e-11 seq129531 82.4 9e-11 >seq305029 Length=127772 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 |||||| ||| | ||||| || |||| | || ||||| || ||||| || || ||||| Sbjct 99012 GTAGATATTACTGGTGTACGGCTCGATGGATTCGTTGTTACCAAGGATCTGAGCGGTGGA 98953 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 || || ||||||||||| | |||||||||||| |||| Sbjct 98952 TGCAGTTGGCATGGGAGCGAGGAGAAGACTGTTACGGA 98915 >seq129531 Length=564 Score = 82.4 bits (90), Expect = 9e-11 Identities = 180/270 (67%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 119366 ATTCATACCTATGAGATTACACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCAC 119425 ||||||||| |||||| || || || || || | ||| | || ||||||| || Sbjct 495 ATTCATACCGATGAGAGAGCAGGGTAGGGCGTCCGTCAGGAACTCCTGTTCGATCTTGAC 436 Query 119426 AGCTTCTTTCACGATGGAGTGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAA 119485 ||||| | | ||| || | | || |||||| ||||| | | |||| || Sbjct 435 CGCTTCCCTGATGATCCCCTGGACATGAGCTTCCGATGGCTTGTTGTTGAGATGTTTGAA 376 Query 119486 CAACTCTACGGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAA 119545 || | |||||| || ||||| || || || | |||||| ||||| ||| Sbjct 375 CATCAGACAGGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAA 316 Query 119546 GCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGA 119605 | ||| || ||||| || |||| |||||| ||||| ||||| ||| ||| || || Sbjct 315 GGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCAAAGGAACCCGA 256 Query 119606 AAAGAAGATGCCCTCCACACAGGCGAAAGC 119635 |||||||||||||| || |||||||| Sbjct 255 GAAGAAGATGCCCTCTACTGCTGCGAAAGC 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586599526013200