Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq295142 93.3 5e-14 seq129531 87.8 2e-12 >seq295142 Length=2525 Score = 93.3 bits (102), Expect = 5e-14 Identities = 268/408 (66%), Gaps = 12/408 (3%) Strand=Plus/Plus Query 117000 CTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAATGGATT 117059 ||||||||||||||| ||||| || || || ||||||||||| ||||| ||||| || Sbjct 1526 CTTCTCAAAGAAGTTCGTCTTTCCTTCCAGCGAGATGTTTTCCATGAAGTCGAATGGGTT 1585 Query 117060 CTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACACATACTC 117119 || | ||||| || | ||| | || | | || | ||| |||| Sbjct 1586 CTCGACATTCCAGATCTTTTTACAGTCAAGCTCAACAAGCAACCTGTCGGCTACAAACTC 1645 Query 117120 AATGTACTCGGACATCTTCT---CAGAGTTCATACCGATGAGATTACATGGGAGTGCGTC 117176 ||||| || | || | | | ||||||||||||||| || || || ||||| Sbjct 1646 GATGTA---GGTCTTCATGAGGCCGGCATTCATACCGATGAGAGAGCAGGGTAGAGCGTC 1702 Query 117177 CAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATA---GTTTC 117233 | | |||| | | || |||| |||||| || | | ||| | |||| | | ||| Sbjct 1703 CGTCAGGAACTCCTGTTCGATCTTAACCGCTTCCCTGATGATCCCCTGGACATGAGCTTC 1762 Query 117234 GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGACC 117293 | ||| | | || | | |||||| | | ||||| || ||| ||||| Sbjct 1763 CGA--TGGCT-TGTTGTTGAGATGCTTGAACATCAGACATGCAAAGTCGCAGTGAAGACC 1819 Query 117294 CTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTT 117353 ||| |||| | || ||||||||||||||| || |||||||| ||||| || ||||| Sbjct 1820 CTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTT 1879 Query 117354 CAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 | ||| | || ||| || || || ||||||||||| ||||| || Sbjct 1880 GAGCCAGAAGATTGCGGCAAAGGAACCCGAGAAGAAGATGCCCTCTAC 1927 >seq129531 Length=564 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| |||||||| |||| | || ||||||||||||||| || || Sbjct 366 GGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCC 307 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 117391 |||||| ||||| || ||||| | ||| | || || ||| || || || |||||||||| Sbjct 306 TGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCA-AAGGAACCCGAGAAGAAGA 248 Query 117392 TACCCTCCAC 117401 | ||||| || Sbjct 247 TGCCCTCTAC 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587600271720560