Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_015225.1 Length=35499 Score E Sequences producing significant alignments: (Bits) Value seq201746 228 2e-55 >seq201746 Length=230 Score = 228 bits (252), Expect = 2e-55 Identities = 201/238 (84%), Gaps = 12/238 (5%) Strand=Plus/Minus Query 6023 ATGCCTTTGAGGAGGGCGGGGTCCATCTGGTCGGCAAAGACAATCTTTTTGTTGTCGAGC 6082 |||||||||||| | || | ||||||||||| | |||||||||||||| |||| ||| Sbjct 230 ATGCCTTTGAGG-GTGCCGCATCCATCTGGTCAG-AAAGACAATCTTTTG--TGTC-AGC 176 Query 6083 TTGG-TGGCGAAGGACCCGTAGAGGGCGTTGGAGAGCAGCTTGGCGATGG-AGCGCAGGG 6140 |||| |||| || |||||||||||||||||||| |||| ||||||||||| ||||||||| Sbjct 175 TTGGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGG 116 Query 6141 --TCTGGTTCTTGTCGCGGTCGGCGCGCTCCTTGGCGGCGATGTTGAGCTGCACGTACTC 6198 | ||||| ||| |||| ||||||||||||||||| |||||||| ||||||||||| || Sbjct 115 GTTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTC 57 Query 6199 GCGCGCCAGGCAGCGCCATCGAGGAAAGACGGTGGTGCGCTCGTCGGGCAGGAGGCGC 6256 |||||| | ||| |||||| |||||| |||| |||||||||||||||| ||| || Sbjct 56 GCGCGCAACGCACCGCCATTCGGGAAAG-CGGT-GTGCGCTCGTCGGGCACCAGGTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113040229274708