Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq308503 95.1 1e-14 seq296590 95.1 1e-14 seq123332 95.1 1e-14 >seq308503 Length=328 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 153909 CTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCT 153968 || |||||| | || || ||||||||||| || || ||||||||||||||||||||| || Sbjct 197 CTTCAGACTCGGGAACAACATATCAGGAGGGAGAAGGCAACCAGTAACATCTGCACATCT 256 Query 153969 CAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTA 154028 ||||| || || || || |||| | | || |||| |||||||| | | |||||| Sbjct 257 CAGGCTCTTCTCGCAAACCTGTCAGCCATGTACGCAGTTTATCATGGACCTCAGGGACTA 316 Query 154029 CA 154030 || Sbjct 317 CA 318 >seq296590 Length=79272 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 153909 CTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCT 153968 || |||||| | || || ||||||||||| || || ||||||||||||||||||||| || Sbjct 24906 CTTCAGACTCGGGAACAACATATCAGGAGGGAGAAGGCAACCAGTAACATCTGCACATCT 24965 Query 153969 CAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTA 154028 ||||| || || || || |||| | | || |||| |||||||| | | |||||| Sbjct 24966 CAGGCTCTTCTCGCAAACCTGTCGGCCATGTACGCAGTTTATCATGGACCTCAGGGACTA 25025 Query 154029 CA 154030 || Sbjct 25026 CA 25027 >seq123332 Length=7778 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 153909 CTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCT 153968 || |||||| | || || ||||||||||| || || ||||||||||||||||||||| || Sbjct 379 CTTCAGACTCGGGAACAACATATCAGGAGGGAGAAGGCAACCAGTAACATCTGCACATCT 438 Query 153969 CAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTA 154028 ||||| || || || || |||| | | || |||| |||||||| | | |||||| Sbjct 439 CAGGCTCTTCTCGCAAACCTGTCAGCCATGTACGCAGTTTATCATGGACCTCAGGGACTA 498 Query 154029 CATGCTATAGCAAGAAGAAT 154048 || || || || ||||| Sbjct 499 CACCACATTGCTAGGAGAAT 518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576875719792960