Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq233793 89.7 3e-13 seq15040 89.7 3e-13 seq177272 84.2 1e-11 >seq233793 Length=42987 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || | || ||||| || || || || || Sbjct 13510 TCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCCAGTTGCTTGCCAGCGAAG 13569 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || |||||||| |||||| || ||| Sbjct 13570 ATGAGACGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGAATCTTTGCCTTTACGTTC 13629 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| | |||||| || | |||||||| || || ||||| |||||||| Sbjct 13630 TCGATGGTGTCACTTGGCTCAACCTCAAGAGTTATGGTCTTGCCTGTGAGGGTCTTCACG 13689 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 13690 AAGATCTGCATA 13701 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/194 (71%), Gaps = 5/194 (3%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| ||||| || || || || || Sbjct 13055 TCCTTCTGGATGTTGTAGTCTGACAGAGTGCGGCCATCTTCCAGTTGCTTGCCAGCGAAG 13114 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || |||||||| |||||| || | || || Sbjct 13115 ATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGAATCTT-TGCCTTAC--AT 13171 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | |||||| || | || ||||| || || ||||| ||||| | Sbjct 13172 TCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGA 13231 Query 34969 CAAAGATCTGCATA 34982 | |||||||||||| Sbjct 13232 CGAAGATCTGCATA 13245 >seq15040 Length=705 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | || | || || || || ||||| || || Sbjct 513 TTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCGAA 454 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 ||||| || ||||| || | || | || |||||||| |||||| || || | Sbjct 453 GATTAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTTAC--A 396 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| | |||||| |||| || ||||| || || ||||| ||||| Sbjct 395 TTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTTGCCTGTGAGGGTCTTG 336 Query 34968 ACAAAGATCTGCATA 34982 || |||||||||||| Sbjct 335 ACGAAGATCTGCATA 321 >seq177272 Length=310 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || | || ||||| || || || || || Sbjct 48 TCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCTTCCAGTTGCTTGCCAGCGAAG 107 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || |||||||| |||||| || || || Sbjct 108 ATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTTAC--AT 165 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | |||||| |||| || ||||| || || ||||| ||||| | Sbjct 166 TCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGA 225 Query 34969 CAAAGATCTGCATA 34982 | |||||||||||| Sbjct 226 CGAAGATCTGCATA 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323356474577232