Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq295142 250 3e-61 seq305029 214 2e-50 seq129531 201 1e-46 seq289945 159 4e-34 seq140081 111 2e-19 seq256343 102 9e-17 seq306440 98.7 1e-15 seq36655 98.7 1e-15 >seq295142 Length=2525 Score = 250 bits (276), Expect = 3e-61 Identities = 591/890 (66%), Gaps = 2/890 (0%) Strand=Plus/Plus Query 18656 TCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCT 18715 |||| |||||||| || ||||| | || | || |||||||| || || ||||| | Sbjct 1492 TCATAACTCCCATCAGCTGGTATTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCTT 1551 Query 18716 CTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATC 18775 | | || || |||||| || || ||||| || | ||||| | || ||||| | Sbjct 1552 CCAGCGAGATGTTTTCCATGAAGTCGAATGGGTTCTCGACATTCCAGATCTTTTTACAGT 1611 Query 18776 CTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAAT 18835 | | || | || | || || |||||||| | || || || ||||| | | || Sbjct 1612 CAAGCTCAACAAGCAACCTGTCGGCTACAAACTCGATGTAGGTCTTCATGAGGCCGGCAT 1671 Query 18836 TCATTCCTATTAATTTAACAGG-TAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 |||| || || | | |||| ||| || || || || || || ||||| || || || Sbjct 1672 TCATACCGATGAGAG-AGCAGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACC 1730 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAAC 18954 || || || || || | |||| || || ||||| || ||| Sbjct 1731 GCTTCCCTGATGATCCCCTGGACATGAGCTTCCGATGGCTTGTTGTTGAGATGCTTGAAC 1790 Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAAT 19014 |||| ||||||||| || || || || ||||||||||| || || | |||||| || || Sbjct 1791 ATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAG 1850 Query 19015 GTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAA 19074 || | || |||||||| |||| ||| || | |||||| || | ||||| || || || Sbjct 1851 GTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGAG 1910 Query 19075 AAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTA 19134 ||||| || || ||||||||||| |||||||| | ||| ||| | || | Sbjct 1911 AAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTACCAAAGTCTGCGCTGTCG 1970 Query 19135 TTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATA 19194 || ||||| | ||| ||||| | || ||||| | ||||| ||||| ||||| | Sbjct 1971 CTACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCTCAACG 2030 Query 19195 GAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTG 19254 | ||| || || || | || | ||| |||||| | |||| || || | ||| Sbjct 2031 GCATTGAAGAGGTAATCTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGTAATGAA 2090 Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 ||||||||||| || || ||||| || || ||||| || ||||| ||||| || || ||| Sbjct 2091 TACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTCGCCTCT 2150 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | ||||| ||||| | ||| ||||| ||||| || ||||| || || ||||| || Sbjct 2151 GCAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCATCGCTT 2210 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTC 19434 || || || || || | ||||| || || || | |||| || | | | Sbjct 2211 GCAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTGGCC 2270 Query 19435 CAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCT 19494 |||| | | ||||| || | ||| || || || | ||||| || || ||||| || Sbjct 2271 CAATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCCGCC 2330 Query 19495 TTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 || || || | | ||| || ||| ||||||| || || || || ||||| Sbjct 2331 TTCTTGTAGAATTGCCAGATGTCATGATATTGGATGGGGAAGATGACAAA 2380 >seq305029 Length=127772 Score = 214 bits (236), Expect = 2e-50 Identities = 369/532 (69%), Gaps = 4/532 (1%) Strand=Plus/Minus Query 47907 ACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTA 47966 ||||||| ||| | | ||| | || || || | ||| || |||| |||||||| || Sbjct 94094 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 94035 Query 47967 CCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTT 48026 ||||| ||||| || ||| | ||||||| ||||||||| |||||| | || || Sbjct 94034 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTACAGCATATATGGGGTA 93975 Query 48027 CCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCT 48086 ||||| ||| | |||||||||||||| | | ||| | || | ||||| || Sbjct 93974 CCAGTCTCTGTTTGAGATTCAATGATGGCATACCACAGAGCCTGGGCCTTCATTGTCTTC 93915 Query 48087 CTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACA 48146 ||| | || || | || || || || | ||| ||||||||||| || | || Sbjct 93914 CTACCCTTTCCTTCTTTCTCATACTTCTCGTAGAGCTTTTCAAATTCATCTCCCCAAACG 93855 Query 48147 TTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACT 48206 || |||| ||||| ||||||| ||| ||||| | | ||| || ||||| || || Sbjct 93854 TTTTCTAGGCCAGGGCATTCATGAGGGCACATGAGGGTCCAGTCACCATCAGCTTCAACC 93795 Query 48207 CTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTC 48265 || ||||||| | ||| || ||||| || || ||| || | ||| | | ||| |||| Sbjct 93794 CTCTTCATAAAGAGATCAGGGATCCAGAGGGC-ATAGAACAGATCTCGGGCTCTCTGTTC 93736 Query 48266 TTCATTGCCACTATTCCTTTTA-AGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTT 48324 || ||||| ||| | ||| ||| |||||| || ||||||||||||||||| | Sbjct 93735 CTCCTTGCCGTGGTTCTTCTTACAGTCTAAGAAA-TCATGGATATCAGCATGCCATGGCT 93677 Query 48325 CTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAG 48384 ||| || || || | |||| || || ||||| ||||| ||||||| |||||| || | Sbjct 93676 CTAGGTAGATGGCAAAGGCACCAGGACGCTTATTGCCTCCCTGATCTACATATCTAGCTG 93617 Query 48385 TATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 ||||||| || || | | |||||| | | |||||| || | ||||| || Sbjct 93616 TATTGTTGTACACACGAAGCATTGGTAATAAACCATTGGAGTTGCCATTTGT 93565 Score = 113 bits (124), Expect = 5e-20 Identities = 128/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 47049 CTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATA 47108 |||||| || |||| |||||||| |||| || ||| | ||||| | ||| |||||| Sbjct 99877 CTCCATGCAAAGAAGTGCATACTGGTTAGCTTGCCATAGTTTGGTTCAGCAATGTGAATA 99818 Query 47109 TTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACC 47168 ||||| ||||||||||||||||| ||||||| | ||| | ||||| | | || | | Sbjct 99817 TTAAGTGATTGACTCTGATCAATGTATGCACCGCGGTCAACAGCCATCTGAATAACAGTC 99758 Query 47169 CTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 | |||| |||||||| || || ||||| | | || ||||| ||||||| Sbjct 99757 TTCTGTGAGATCTCCCAAACAGTCTTATACAATGCCTTGATGTCATCTGGGA 99706 Score = 96.9 bits (106), Expect = 4e-15 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 47907 ACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTA 47966 ||||||| ||| | | ||| | || || || | ||| || |||| |||||||| || Sbjct 95789 ACCTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTT 95730 Query 47967 CCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTT 48026 ||||| ||||| || ||| | ||||||| ||||||||| |||||| | || || Sbjct 95729 CCCAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTAGAGCATATATGGGGTA 95670 Query 48027 CCAGTTTCTATCTGAGATTCAATGAT 48052 ||||| ||| | |||||||||||||| Sbjct 95669 CCAGTCTCTGTTTGAGATTCAATGAT 95644 >seq129531 Length=564 Score = 201 bits (222), Expect = 1e-46 Identities = 276/386 (72%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 |||||||| ||||||| ||| ||||| || || || || ||||||||||| || || | | Sbjct 386 AGATGTTTGAACATCAGACAGGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGT 327 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 ||||| || || || | || |||||||| |||| ||| || | |||||| || | |||| Sbjct 326 TCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATCGCAGCA 267 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || || || || ||||| || || ||||||||||| |||||||| | ||| ||| | Sbjct 266 AAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTGCCAAAG 207 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 || | || ||||| | || ||||| | || ||||| | || |||||| Sbjct 206 TCTGCGCTGTCGCTACTGATCCAGTCCAACGCCCATTGTGCTTTCTTGGTGACGCATGGC 147 Query 19183 ATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCT 19242 || ||||| | | ||| || || || | || | ||| |||||| | |||| || Sbjct 146 ATGGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTGGATCTTTGATGTATGTGTCG 87 Query 19243 ATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA 19302 || | ||| ||||||||||| || || ||||| || || ||||| || ||||| ||| Sbjct 86 ATGAGTAATGAATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAA 27 Query 19303 CATCTTGCTTCTGTTATCTGTACTTC 19328 || ||||| |||| ||||| ||||| Sbjct 26 CACCTTGCCTCTGCAATCTGCACTTC 1 >seq289945 Length=532 Score = 159 bits (176), Expect = 4e-34 Identities = 262/373 (70%), Gaps = 5/373 (1%) Strand=Plus/Minus Query 47022 TAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTA 47081 ||||||||||| ||||| | ||| | |||||| || |||| |||||||| |||| || Sbjct 372 TAATACATACCCGTCTTCAGACCCGATCTCCATGCAAAGAAGTGCATACTGGTTAGCTTG 313 Query 47082 GAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCT 47141 ||| | ||||| | ||| ||||||||||| ||||||||||||||||| ||||||| Sbjct 312 CCATAGTTTGGTTCAGCAATGTGAATATTAAGTGATTGACTCTGATCAATGTATGCACCG 253 Query 47142 CTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATT 47201 | ||| | ||||| | | || | | | |||| |||||||| || || ||||| | | Sbjct 252 CGGTCAACAGCCATCTGAATAACAGTCTTCTGTGAGATCTCCCAAACAGTCTTATACAAT 193 Query 47202 TGTTTAATGTCTTCTGGGA--GAT-TAGTATTTTGAATAGATCCTCCgttttctataatt 47258 || ||||| ||||||| ||| | | || ||||||||||| || | || | Sbjct 192 GCCTTGATGTCATCTGGGATTGATGGAATGTTCTGAATAGATCCAGAGTGAGCAATGAGC 133 Query 47259 ttgttttttaattcatttgaccaaagttttcgttcagttaatgtttttaa-AAGATGAGG 47317 | || || | |||| ||||| || | | | ||| || ||| ||||||| | Sbjct 132 ATATTCTTCATCTCATCAGACCACAG-ACCCATGTCGGTAAGGTCCCTAAGAAGATGATG 74 Query 47318 ATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGG 47377 ||| || | ||||| ||||| || || || | ||| | || |||||||| || || || Sbjct 73 ATTGACGACCTGAAACTCTCCTGAAAGCACACGACGCGTGTAGATATTACTGGTGTACGG 14 Query 47378 TTCTATAGATTCA 47390 || || |||||| Sbjct 13 CTCGATGGATTCA 1 >seq140081 Length=702 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 65854 GTAATAGGAATAGATGAAGGCCAATTCTTTCAAGATATTGTAGAGTTTTGTGAAAATATG 65913 || |||||||| |||||||||||||| |||| ||| ||| ||||||||||| | ||| Sbjct 212 GTCATAGGAATCGATGAAGGCCAATTTTTTCCTGATTGTGTGAAGTTTTGTGAAGAAATG 271 Query 65914 GCAAATAAAGGAAAAATAGTGATAGTTGCAGCATTGGATGGAACATTTAAAAGAAAACCT 65973 || || ||| ||||| | || || || ||||| || |||||||| | || || | Sbjct 272 GCCAACCTAGGCAAAATCATCATTGTAGCTGCATTAGACGGAACATTCCAGAGGAAGGGT 331 Query 65974 TTTGGTAATGTATTAAATTTAATTCCATTATCTGAAACAGTAACAAAACTTACAGCTGTG 66033 |||||| || | |||||| | | ||| | |||||| || | || || | ||||| Sbjct 332 TTTGGTGATATTTTAAATCTTGTACCACTTGCTGAAAGTGTCATCAAGCTCAACGCTGTC 391 Query 66034 TGTATGAAATGTTTTAAAGATGCATC 66059 |||||| | || | ||| || || || Sbjct 392 TGTATGCATTGCTATAACGAAGCTTC 417 >seq256343 Length=109058 Score = 102 bits (112), Expect = 9e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | |||||| || || || | || |||||||| |||| ||| | Sbjct 31440 CCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCT 31381 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || | |||||| || || || ||||| || || ||||||||||| |||| Sbjct 31380 TGAGCCAGAAGATCGCAGCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAG 31321 Query 19103 CAAC 19106 |||| Sbjct 31320 CAAC 31317 >seq306440 Length=70067 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 19038 tttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGC 19097 ||| || |||||||| || | |||||| || ||||| || ||||| ||||||||||| || Sbjct 67540 TTTCTTGAACCAGAAAATGGCAGCAAACGAGCCAGAGAAAAATATTCCTTCTACTGCAGC 67599 Query 19098 AAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG-AATCCATTTCAGTGCCC 19156 || || || | || || ||| | || || | | ||| |||||| || || |||| Sbjct 67600 GAATGCCACCAACCTCTCACCAAAGGTACTCTC-CTCTGATGCAATCCACTTGAGAGCCC 67658 Query 19157 AATCAGCCTTCTTTTTTACACATGGCATTGT 19187 ||||||| ||||| |||||| |||||| ||| Sbjct 67659 AATCAGCTTTCTTCTTTACAAATGGCACTGT 67689 >seq36655 Length=16638 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 19038 tttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGC 19097 ||| || |||||||| || | ||||||||| ||||| || ||||| |||||||| || || Sbjct 4062 TTTCTTGAACCAGAAAATGGCAGCAAATGAGCCAGAGAAAAATATTCCTTCTACCGCAGC 4121 Query 19098 AAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG-AATCCATTTCAGTGCCC 19156 || || || | || || || | || || | | ||| |||||| ||||| |||| Sbjct 4122 GAACGCCACCAACCTCTCACCGAAGGTACTCTCCTC-TGATGCAATCCACTTCAGAGCCC 4180 Query 19157 AATCAGCCTTCTTTTTTACACATGGCATTGT 19187 ||||||| ||||| |||||| |||||| ||| Sbjct 4181 AATCAGCTTTCTTCTTTACAAATGGCACTGT 4211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559840733150160