Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq295142 172 6e-38 >seq295142 Length=2525 Score = 172 bits (190), Expect = 6e-38 Identities = 309/449 (69%), Gaps = 2/449 (0%) Strand=Plus/Plus Query 37164 TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTA 37223 || |||| | ||||||||| || || || | ||| || ||||| || || | |||||| Sbjct 1785 TTGAACATCAGACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTT 1844 Query 37224 GAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT 37283 || ||||| | |||||||| | ||||| ||| || | ||| || ||||| ||||| || Sbjct 1845 GAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAA 1904 Query 37284 CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGT-TGA 37342 || || ||||| || || || |||||||| || || || | | |||||| ||||| || Sbjct 1905 CCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTACC-AAAGTCTGC 1963 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 || | | ||||| | | ||| | || || | ||||| || || Sbjct 1964 GCTGTCGCTACTGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGT 2023 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 |||| || || ||||| | | | | | | |||| | || || || || || || Sbjct 2024 CTCAACGGCATTGAAGAGGTAATCTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAG 2083 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 ||| ||||||||| ||||| || |||||||| || ||||| || || || |||||||| Sbjct 2084 TAATGAATACATTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCT 2143 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 || || | | || || || | |||||| | | | ||||| ||||| || || || Sbjct 2144 CGCCTCTGCAATCTGCACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACC 2203 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACAT 37611 ||| || || || |||||||||||||||| Sbjct 2204 ATCGCTTGCAGCGAAGAAAGCAAGAACAT 2232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589926846135760