Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq80839 125 6e-24 seq283656 116 3e-21 seq233793 114 1e-20 seq172955 113 4e-20 seq15040 113 4e-20 seq177272 107 2e-18 seq33451 100 2e-16 seq229213 95.1 1e-14 seq124407 93.3 3e-14 seq73885 93.3 3e-14 seq171612 91.5 1e-13 >seq80839 Length=604 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| | ||| | ||| ||||| ||||| || || || ||||| || | Sbjct 230 CCACCACGTAGACGAAGAACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCTGAT 171 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || || || ||||||||||| || || || ||| Sbjct 170 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGA 111 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||| || || || || ||| | |||| |||||||| | ||||| Sbjct 110 ATACCTTCTTTATCCTGGATCTTAGCCTTGACATTCTCTATGGTGTCAGAAGGCTCCACC 51 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || ||||| || | || || || ||||||||||| Sbjct 50 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAATATCTGCAT 4 >seq283656 Length=776 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || || || |||||||| || | | ||| | | |||| ||| Sbjct 579 ACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCCATCTTCC 638 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || |||| ||||| |||||||| || || ||||| || |||||| Sbjct 639 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGGATACCTTCCTTGTCTTGA 698 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| |||||| |||| | ||| ||| | |||||| || || |||| ||||| Sbjct 699 ATTTTGGCCTTTACATTTTCAATAGTATCACTGGGTTCCACCTCGAGGGTGATGGTTTTC 758 Query 101441 CCGGTTAAAGTTTTTAC 101457 || || || ||||| || Sbjct 759 CCCGTCAATGTTTTCAC 775 >seq233793 Length=42987 Score = 114 bits (126), Expect = 1e-20 Identities = 152/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| || || || || || || || ||||| || | | ||| | | |||| || Sbjct 13036 AACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGGCCATCTTC 13095 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 || |||||| || || || || | |||||| ||||| || ||||||||||| || ||||| Sbjct 13096 CAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTG 13155 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || | |||| ||||| | || | |||||| | || || |||||||||| || || Sbjct 13156 AA-TCTTTGCCTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTT 13214 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || | || || || || |||||||| Sbjct 13215 GCCTGTGAGGGTCTTGACGAAGATCTGCAT 13244 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| || || || || ||||| || ||||| || | | ||| | | | || || Sbjct 12808 AACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTC 12867 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | |||||| || || || || | |||||| |||||||| ||||||||||| || || || Sbjct 12868 GAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 12927 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| ||| |||||| | || | |||||| | || || |||||||||| || || Sbjct 12928 AATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTT 12987 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || | || || || || |||||||| Sbjct 12988 GCCTGTGAGGGTCTTGACGAAGATCTGCAT 13017 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| || || || || || || || ||||| || | | ||| | | | || || Sbjct 13263 AACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTC 13322 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | |||||| || || || || | |||||| |||||||| ||||||||||| || || || Sbjct 13323 GAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 13382 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| || ||||| | || | |||||| | || || |||||||||| || || Sbjct 13383 AATCTTAGCCTTTACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTT 13442 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || | || || || || |||||||| Sbjct 13443 GCCTGTGAGGGTCTTGACGAAGATCTGCAT 13472 >seq172955 Length=397 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| || || || || ||||| || ||||| || | | ||| | | |||| || Sbjct 304 AACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTC 245 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | |||||| || || || || | |||||| |||||||| ||||||||||| || || || Sbjct 244 GAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 185 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| ||| |||||| | || | ||||| | || || |||||||||| || || Sbjct 184 AATCTTTGCCTTTACATTCTCGATGGTGTCGCTTGGCTCAACCTCAAGAGTGATGGTCTT 125 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || | || || || || |||||||| Sbjct 124 GCCAGTGAGGGTCTTGACGAAGATCTGCAT 95 >seq15040 Length=705 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| || |||||||| || || || ||||| || | | ||| | | | || || Sbjct 531 AACGAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTC 472 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | |||||| || || || || | |||||| |||||||| ||||||||||| || || || Sbjct 471 GAGTTGCTTTCCAGCGAAGATTAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 412 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| ||| |||||| | || | |||||| | || || || ||||||| || || Sbjct 411 AATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTT 352 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || | || || || || |||||||| Sbjct 351 GCCTGTGAGGGTCTTGACGAAGATCTGCAT 322 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | |||||| || || || || | |||||| ||||| || |||||||||||||| Sbjct 704 TCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCTTTG 645 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || ||||| ||| ||| ||| | || | |||||| | || || |||||||||| Sbjct 644 TCCTGAATCTTTGCTTTGACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATG 585 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || | || || || || |||||||| Sbjct 584 GTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 550 >seq177272 Length=310 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || || || || || || ||||| || | | ||| | | | || |||| ||| Sbjct 35 ATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCTTCCAGTTG 94 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | |||||| ||||| || ||||||||||| || |||||||| || Sbjct 95 CTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGAATCTT 154 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | |||||| | || | |||||| | || || || ||||||| || ||||| || Sbjct 155 TGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTTGCCAGT 214 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 215 GAGGGTCTTGACGAAGATCTGCAT 238 >seq33451 Length=524 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| || || || || || || || ||||| || | | ||| | | || || Sbjct 349 AACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGACCGTCCTC 290 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | |||||| || || || || | |||||| |||||||| ||||||||||| || || || Sbjct 289 GAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 230 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||| || ||||| | || | |||||| | || || |||||||||| || || Sbjct 229 AATTCTTGTCCTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTT 170 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || | || || || || |||||||| Sbjct 169 GCCAGTAAGGGTCTTGACGAAGATCTGCAT 140 >seq229213 Length=300 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | |||||| || || || || | |||||| |||||||| ||||||||||| || Sbjct 4 TCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTG 63 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || ||||| ||| |||||| | || | |||||| | || || |||||||||| Sbjct 64 TCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATG 123 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || | || || || || |||||||| Sbjct 124 GTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 158 >seq124407 Length=407 Score = 93.3 bits (102), Expect = 3e-14 Identities = 133/186 (72%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| || || || || ||||| || ||||| || | | ||| | | | || || Sbjct 187 AACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTC 128 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | |||||| || || || || | |||||| |||||||| ||||||||||| || || || Sbjct 127 GAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGG-GGAATGCCTTCCTTGTCCTG 69 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| ||| |||||| | || | |||||| | || || |||||||| | || || Sbjct 68 AATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTAATGGTCTT 9 Query 101440 GCCGGT 101445 ||| || Sbjct 8 GCCAGT 3 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 101270 AGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTA 101329 || |||||| ||| | | || ||||| || | | ||| | | | || || | |||||| Sbjct 405 AGAGTAGATCCTTCTGG-ATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTG 347 Query 101330 CCTGCAAATATCAAACGCTGT-TGA-TCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 || || || || | |||||| ||| ||||| ||||||||||| || || ||||| || | Sbjct 346 CCAGCGAAGATGAGACGCTGCCTGACTCGGGGGGAATGCCTTCCTTGTCCTGAATCTTGT 287 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||| | || | |||||| | || || |||||||||| || ||||| || | Sbjct 286 -CCTTACATTCTCAATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTAA 228 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 || || || || |||||||| Sbjct 227 GGGTCTTGACGAAGATCTGCAT 206 >seq73885 Length=163 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 101285 TGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAA 101344 || || ||||| || | | ||| | | | || || | |||||| || || || || | | Sbjct 3 TGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGA 62 Query 101345 CGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACA 101404 ||||| |||||||| ||||||||||| || || ||||| ||| ||||| |||||| Sbjct 63 CGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTTACGTTTTCTATG 122 Query 101405 GTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 |||||| | || || |||||||||| || ||||| || Sbjct 123 GTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTGT 163 >seq171612 Length=420 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | |||||| || || || || | |||||| ||||| || |||||||||||||| Sbjct 413 TCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCTTTG 354 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || ||||| ||| ||| ||| | || | ||||| | || || |||||||||| Sbjct 353 TCCTGAATCTTTGCTTTGACATTCTCGATGGTGTCGCTTGGCTCAACCTCAAGAGTGATG 294 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || | || || || || |||||||| Sbjct 293 GTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394719420217458