Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq295142 228 2e-54 seq129531 158 2e-33 seq305029 116 7e-21 seq256343 105 1e-17 seq306440 91.5 3e-13 seq36655 91.5 3e-13 seq205404 89.7 1e-12 seq18331 89.7 1e-12 >seq295142 Length=2525 Score = 228 bits (252), Expect = 2e-54 Identities = 566/856 (66%), Gaps = 5/856 (1%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | |||||||||||||| ||||| || |||| ||||||||| || Sbjct 1508 CTGGTATTCACCGACCTTCTTCTCAAAGAAGTTCGTCTTTCCTTCCAGCGAGATGTTTTC 1567 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||| ||||| || | | | | | | | | || | |||| Sbjct 1568 CATGAAGTCGAATGGGTTCTCGACATTCCAGATCTTTTTACAGTCAAGCTCAACAAGCAA 1627 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 || || || |||||||||| | ||||||| | ||||| || ||||| || Sbjct 1628 CCTGTCGGCTACAAACTCGATGTAGGTCTTCATGAGGCCGGCATTCATACCGATGAGAGA 1687 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| | ||| | || || ||||||| || |||| || ||||||| | ||| Sbjct 1688 GCAGGGTAGAGCGTCCGTCAGGAACTCCTGTTCGATCTTAACCGCTTCCCTGATGATCCC 1747 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 || || | | || || || |||||| || |||||| | | || || ||||| Sbjct 1748 CTGGACATGAGCTTCCGATGGCTTGTTGTTGAGATGCTTGA---ACATCAGACATGCAAA 1804 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 ||| | ||| | || ||||| | ||||||||| | || |||||| || || ||||| Sbjct 1805 GTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCAT 1864 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 | || | | ||||||||||| ||||| || || || || ||||||||||||||||| Sbjct 1865 CAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGAGAAGAAGATGCCCTC 1924 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAG-AAGCGTTCTTGTCTGAGATCCAGG 48317 ||||| ||||| || || ||| | | | |||| ||| | | | ||||||| Sbjct 1925 TACTGCTGCGAAAGCAACGACCCT-TGTACCAAAGTCTGCGCTGTCGCTACTGATCCAGT 1983 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT 48377 |||||||| | || ||||| ||| || ||||| ||||| | ||| |||||| | Sbjct 1984 CCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCTCAACGGCATTGAAGAGGT 2043 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGT 48437 | | || | ||| || | || || || || || ||||| || |||| Sbjct 2044 AATCTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGTAATGAATACATTTCTGAGT 2103 Query 48438 GCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTT 48497 | | || || || || ||||||||||||||||| ||| ||||| | |||||||| Sbjct 2104 GGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTCGCCTCTGCAATCTGCACTT 2163 Query 48498 CTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGG 48557 || | || || || | || ||||||||||| || ||||| ||||| ||||| | Sbjct 2164 CTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCATCGCTTGCAGCGAAGAAAG 2223 Query 48558 CAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGT 48617 |||| ||||| | ||| || | ||| |||| ||||| ||| | | || Sbjct 2224 CAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTGGCCCAATGGTCCAAGT 2283 Query 48618 CTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGC 48677 ||||| || || || || || | ||||||||||| || || || ||||| | Sbjct 2284 CTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCCGCCTTCTTGTAGAATT 2343 Query 48678 CCCATATGTCCGGATA 48693 ||| ||||| |||| Sbjct 2344 GCCAGATGTCATGATA 2359 >seq129531 Length=564 Score = 158 bits (174), Expect = 2e-33 Identities = 353/527 (67%), Gaps = 5/527 (1%) Strand=Plus/Minus Query 47973 ACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCT 48032 |||||||||| | ||||||| | ||||| || ||||| || ||| | || | Sbjct 523 ACTCGATGTAGGTCTTCATGAGGCCGGCATTCATACCGATGAGAGAGCAGGGTAGGGCGT 464 Query 48033 TTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACT 48092 || || ||||||| || |||| || ||||||| | ||| || || | | | Sbjct 463 CCGTCAGGAACTCCTGTTCGATCTTGACCGCTTCCCTGATGATCCCCTGGACATGAGCTT 404 Query 48093 CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGC 48152 | || || |||||| || || ||| | | || ||||||||||| | ||| | | Sbjct 403 CCGATGGCTTGTTGTTGAGATGTTTGA---ACATCAGACAGGCAAAGTCGCAGTGAAGAC 347 Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 | ||||| | ||||||||| | || |||||| || || ||||| | || | | | Sbjct 346 CCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCT 287 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 |||||||||| || || || || || || ||||||||||||||||| ||||| ||||| | Sbjct 286 TGAGCCAGAAGATCGCAGCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAG 227 Query 48273 CGGTGAGCCTCTCTCCGAAAG-AAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCT 48331 | || ||| | | | |||| ||| | | | ||||||| | |||||| | | Sbjct 226 CAACGACCCT-TGTGCCAAAGTCTGCGCTGTCGCTACTGATCCAGTCCAACGCCCATTGT 168 Query 48332 GCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCT 48391 || ||||| ||| ||||||||| ||||| | ||| |||||| | | | || | || Sbjct 167 GCTTTCTTGGTGACGCATGGCATGGTCTCAACGGCATTGAAGAGGTAATCTCTCTGAGCT 108 Query 48392 GCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATA 48451 | || | || || || || || ||||| || ||||| | || || || Sbjct 107 GGATCTTTGATGTATGTGTCGATGAGTAATGAATACATTTCTGAGTGGATGTTTTCAATT 48 Query 48452 GCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTC 48498 || ||||||||||||||||| ||| ||||| | ||||||||| Sbjct 47 GCAATCTGGAACCCGTAGAAACACCTTGCCTCTGCAATCTGCACTTC 1 >seq305029 Length=127772 Score = 116 bits (128), Expect = 7e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 |||||||| || || ||||| || | ||| |||||| ||| || | ||| Sbjct 98424 CCTTTGCTGACAGGTGAGCCCTCATATGTCTCGTAAGGGCCAAGCTTAGCAGCAATCTCA 98365 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| ||| ||||| ||||||||||||||||| |||| ||||||| |||||| Sbjct 98364 CAGCTAGCCTTCAGAGCAGCATAGTAGATGGTTTCAAAGATCTGGATGTTGAGTTTCTTG 98305 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 ||||||| | | |||||| | | ||||| | ||| ||||||| || ||||| || Sbjct 98304 GCCTCTGCGCTCTCGAAGGGGAACCTCATGAGGATGAAAGCATCAGCTAGACCCTGAACA 98245 Query 213321 CCGATGCCGATGGG 213334 ||||| |||||||| Sbjct 98244 CCGATTCCGATGGG 98231 Score = 109 bits (120), Expect = 1e-18 Identities = 303/456 (66%), Gaps = 14/456 (3%) Strand=Plus/Minus Query 213531 TACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTT 213590 ||||| | |||||| || |||||||| |||||| |||||| |||| ||| || ||||| Sbjct 94076 TACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTTCCCAAGTTTTGTTGGTTA 94017 Query 213591 GACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 ||| ||| | |||||||| ||||| || |||| || |||||| || || Sbjct 94016 CTCTTCCTGTTACAATGGTCCTTGTACAGCATATATGGGGTACCAGTCTCTGTTTGAGAT 93957 Query 213651 ACCAGTATCTGGCT--CCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCG 213708 | | || ||| ||| || | |||||| | | ||| | ||| Sbjct 93956 TCAATGAT--GGCATACCACAGAGCCTGGGCCTTCATTGTCTTCCTACCCTTTCCTTCTT 93899 Query 213709 TAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCG 213768 | ||| |||| |||||||||| | ||||| | ||||| || | || || || | Sbjct 93898 T---CTCATACTTCTCGTAGAGCTTTTCAAATTCATCTCCCCAAACGTTTTCTAGGCCAG 93842 Query 213769 GACAGG-ATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAAC 213827 | || ||| ||| ||||||||| ||||||| || ||| || || |||| ||| || Sbjct 93841 GGCATTCATGAGGG-CACATGAGGGTCCAGTCACCATCAGCTTCAACCCTCTTCATAAAG 93783 Query 213828 AGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAG 213887 || || |||| ||| || || |||||| || | || ||| || ||| || | Sbjct 93782 AGATCAGGGATCCAGAGGGCATAGAACAGATCTCGGGCTCTCTGTTCCTCCTTGCCGTGG 93723 Query 213888 TTTTTGCG-CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGC 213946 || || ||| |||| || ||| ||| || || ||||| ||||| | ||||||||| Sbjct 93722 TTCTTCTTACAG-TCTAAGAAATCATGGATATCAGCATGCCATGGCTCTAGGTAGATGGC 93664 Query 213947 AAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCAC 213979 |||||| || | || | ||||| ||||| || || Sbjct 93663 AAAGGCACCAGGACGCTTATTGCCTCCCTGATCTAC 93628 >seq256343 Length=109058 Score = 105 bits (116), Expect = 1e-17 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | ||||||||| | || |||||| || || ||||| | || | | ||| Sbjct 31438 TCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAGCCCTGGCATCAGACCTCGTTTCTTG 31379 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 |||||||| || || || || || || ||||||||||||||||| ||||| ||||| || Sbjct 31378 AGCCAGAAGATCGCAGCAAAGGAACCCGAGAAGAAGATGCCCTCTACTGCTGCGAAAGCA 31319 Query 48275 GTGAGCCTCTCTCCGAAAG-AAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGC 48333 || ||| | | | |||| ||| | | | ||||||| | |||||| | ||| Sbjct 31318 ACGACCCT-TGTGCCAAAGTCTGCGCTGTCGCTACTGATCCAGTCCAACGCCCATTGTGC 31260 Query 48334 CTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 ||||| ||| ||||||||| ||||| | ||| |||||| Sbjct 31259 TTTCTTGGTGACGCATGGCATGGTCTCAACGGCATTGAAGAG 31218 >seq306440 Length=70067 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || |||| |||||||||||||||| ||| || ||||||||||||||||| Sbjct 64718 CTGGTATTCTCCGACTCGTTTCTCAAAGAAGTTTGACTTTCCTTCCAACGAGATGTTCTC 64777 Query 47899 CATGAAGAGGAAGGGGTT 47916 ||||||| |||||||| Sbjct 64778 CATGAAGTCAAAGGGGTT 64795 >seq36655 Length=16638 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || |||| |||||||||||||||| ||| || ||||||||||||||||| Sbjct 1261 CTGGTATTCTCCGACTCGTTTCTCAAAGAAGTTTGACTTTCCTTCCAACGAGATGTTCTC 1320 Query 47899 CATGAAGAGGAAGGGGTT 47916 ||||||| |||||||| Sbjct 1321 CATGAAGTCAAAGGGGTT 1338 >seq205404 Length=493 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 241497 CCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGG 241556 |||||||||| |||||||||| || || || || || |||||| || ||||| ||| Sbjct 342 CCTTCACTTTATCCTCCAGCCTGGCAATTCGCTCAAGCTTGCGCTTACGACATTTACTGG 401 Query 241557 CTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGT 241616 | || | || |||| ||| || || | || |||||||||||||| || ||||| | Sbjct 402 CGGCGATTCGATTCCTGAGCCTTTTCCTCTCAGCCTTGATGCGTTCTTGTGTTTCCATAT 461 Query 241617 CGATCGGAGACTTGGGT 241633 |||| || ||| ||||| Sbjct 462 CGATGGGGGACATGGGT 478 >seq18331 Length=174866 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 241497 CCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGG 241556 |||||||||| |||||||||| || || || || || |||||| || ||||| ||| Sbjct 116882 CCTTCACTTTATCCTCCAGCCTGGCAATTCGCTCAAGCTTGCGCTTACGACATTTACTGG 116941 Query 241557 CTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGT 241616 | || | || |||| ||| || || | || |||||||||||||| || ||||| | Sbjct 116942 CGGCGATTCGATTCCTGAGCCTTTTCCTCTCAGCCTTGATGCGTTCTTGTGTTTCCATAT 117001 Query 241617 CGATCGGAGACTTGGGT 241633 |||| || ||| ||||| Sbjct 117002 CGATGGGGGACATGGGT 117018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927774135016960