Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq295142 190 4e-43 seq129531 165 2e-35 seq256343 104 4e-17 seq36655 93.3 8e-14 seq120787 87.8 3e-12 >seq295142 Length=2525 Score = 190 bits (210), Expect = 4e-43 Identities = 544/838 (65%), Gaps = 13/838 (2%) Strand=Plus/Minus Query 25489 TACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATG 25548 ||||||||||| | || |||||| ||||| ||| | ||||| |||| ||| || Sbjct 2338 TACAAGAAGGCGGAGGCATCCTTCTGGACGGCCGAGGAGGTCGATCTTTCCAAAGACTTG 2279 Query 25549 GACGGCTGGTACGCTCTATCCAAAGAC---GAGCAGCATTTTCTCAAGTACGTGTTGGCA 25605 ||| ||| | || || |||| ||| ||| || || | | || | || Sbjct 2278 GACCATTGGGCCAAGCT---CACAGACAATGAGAGGCACTTCATCTCGCATGTTCTTGCT 2222 Query 25606 TTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAA 25665 ||||| || || |||||||| || || ||||| || || || || | | ||| Sbjct 2221 TTCTTCGCTGCAAGCGATGGTATTGTCAATGAGAACTTGGTTGAAAGGTTTAGCCAAGAA 2162 Query 25666 GTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCAC 25725 |||||| | ||||| | |||||||||||| |||||||| || || ||||| | ||| Sbjct 2161 GTGCAGATTGCAGAGGCGAGGTGTTTCTACGGGTTCCAGATTGCAATTGAAAACATCCAC 2102 Query 25726 TCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAGAGAGATCGG 25785 || || ||||| | || | || ||||| | ||| || |||||||| Sbjct 2101 TCAGAAATGTATTCATTACTCATCGACACATACATCAAAGATTCAGCTCAGAGAGATTAC 2042 Query 25786 CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAG 25845 || || |||| | ||| ||| || | ||| | ||| |||| ||||| || | Sbjct 2041 CTCTTCAATGCCGTTGAGACCATGCCGTGTGTCACCAAGAAAGCGCAATGGGCGCTGGAC 1982 Query 25846 TGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAG 25905 ||||||| ||| | ||||| ||||| || | || || || || || || ||| Sbjct 1981 TGGATCAGTAGCGACAGCGCAGACTTTGGTACAAGGGTCGTTGCTTTCGCAGCAGTAGAG 1922 Query 25906 GGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-AT 25964 |||||||| ||| ||||| ||||| || ||||||||||||||| | | | || | || Sbjct 1921 GGCATCTTCTTCTCGGGTTCCTTTGCCGCAATCTTCTGGCTCAAGAA-ACGAGGTCTGAT 1863 Query 25965 GCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTT 26024 ||| ||||| ||| || || || ||||||||||| ||||||||||| ||| | || || Sbjct 1862 GCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGACGAGGGTCTTCACTGCGACTT 1803 Query 26025 TGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAG 26084 ||| || ||| | | || | || | | |||| || || ||| ||| | | Sbjct 1802 TGCATGTCTGATGTTCAAG---CATCTCAACAACAAGCCATCGGAAGCTCATGTCCAGGG 1746 Query 26085 TATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNN 26144 ||||||| || || || ||||||| ||||||| | Sbjct 1745 GATCATCAGGGAAGCGGTTAAGATCGAACAGGAGTTCCTGACGGACGCTCTACCCTGCTC 1686 Query 26145 NNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCT 26204 | || ||||| | | ||||||| ||||| |||| ||| |||||| | Sbjct 1685 TCTCATCGGTATGAATGCCGGCCTCATGAAGACCTACATCGAGTTTGTAGCCGACAGGTT 1626 Query 26205 GCTGTGCCAGCTGGGACTCGCCAGA-CTCTACAGTACGCCTAACCCGTTCGACTTTATGG 26263 ||| |||| |||| | | ||| | | ||||| |||||||| |||| Sbjct 1625 GCTTGTTGAGCT-TGACTGTAAAAAGATCTGGAATGTCGAGAACCCATTCGACTTCATGG 1567 Query 26264 AAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||| ||| ||||||| ||||| ||||||||||| |||| |||||| || || || Sbjct 1566 AAAACATCTCGCTGGAAGGAAAGACGAACTTCTTTGAGAAGAAGGTCGGTGAATACCA 1509 >seq129531 Length=564 Score = 165 bits (182), Expect = 2e-35 Identities = 262/373 (70%), Gaps = 2/373 (1%) Strand=Plus/Plus Query 25663 GAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTG 25722 ||||||||| | ||||| | |||||||||||| |||||||| || || ||||| | Sbjct 1 GAAGTGCAGATTGCAGAGGCAAGGTGTTTCTACGGGTTCCAGATTGCAATTGAAAACATC 60 Query 25723 CACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAGAGAGAT 25782 ||||| || ||||| | || | || ||||| | ||| || |||||||| Sbjct 61 CACTCAGAAATGTATTCATTACTCATCGACACATACATCAAAGATCCAGCTCAGAGAGAT 120 Query 25783 CGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATG 25842 || || |||| | ||| ||| || || ||| | ||| || | ||||| || Sbjct 121 TACCTCTTCAATGCCGTTGAGACCATGCCATGCGTCACCAAGAAAGCACAATGGGCGTTG 180 Query 25843 AAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTG 25902 | ||||||| ||| | ||||| |||||| || | || || || || || || Sbjct 181 GACTGGATCAGTAGCGACAGCGCAGACTTTGGCACAAGGGTCGTTGCTTTCGCAGCAGTA 240 Query 25903 GAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC- 25961 ||||||||||| ||| ||||| ||||| || ||||||||||||||| | | | || | Sbjct 241 GAGGGCATCTTCTTCTCGGGTTCCTTTGCTGCGATCTTCTGGCTCAAG-AAACGAGGTCT 299 Query 25962 CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGA 26021 ||||| ||||| ||| || || || ||||||||||| ||||||||||| ||| | || Sbjct 300 GATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGACGAGGGTCTTCACTGCGA 359 Query 26022 TTTTGCCTGCCTG 26034 |||||||| ||| Sbjct 360 CTTTGCCTGTCTG 372 >seq256343 Length=109058 Score = 104 bits (114), Expect = 4e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 25794 TGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAA 25853 |||| | ||| ||| || || ||| | ||| || | ||||| || | ||||||| Sbjct 31226 TGCCGTTGAGACCATGCCATGCGTCACCAAGAAAGCACAATGGGCGTTGGACTGGATCAG 31285 Query 25854 CAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTT 25913 ||| | ||||| |||||| || | || || || || || || ||||||||||| Sbjct 31286 TAGCGACAGCGCAGACTTTGGCACAAGGGTCGTTGCTTTCGCAGCAGTAGAGGGCATCTT 31345 Query 25914 TTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGC 25972 ||| ||||| ||||| || ||||||||||||||| | | | || | ||||| |||| Sbjct 31346 CTTCTCGGGTTCCTTTGCTGCGATCTTCTGGCTCAAG-AAACGAGGTCTGATGCCAGGGC 31404 Query 25973 TGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 | ||| || || || ||||||||||| ||||||| Sbjct 31405 TTACCTTCTCAAATGAACTCATCAGCAGAGACGAGG 31440 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| |||||||| ||||||||||| ||| ||||||| ||||| ||||||||||| ||| Sbjct 33210 AACCCATTCGACTTCATGGAAAACATCTCGCTGGAAGGAAAGACAAACTTCTTTGAGAAG 33269 Query 26305 AGGGTCGGCGACTATCA 26321 | |||||| || || || Sbjct 33270 AAGGTCGGTGAATACCA 33286 >seq36655 Length=16638 Score = 93.3 bits (102), Expect = 8e-14 Identities = 110/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 25574 ACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGA 25633 ||||| | |||||| | | |||||||||| ||||||||||| ||||||||| |||| Sbjct 6165 ACGAGAAACATTTTGTTACCCACGTGTTGGCGTTCTTTGCAGCAAGTGATGGTATCGTGA 6106 Query 25634 ACGAGAATCT-GTGCGAGAGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTT 25691 | ||||| || ||| || || |||| ||||| ||| ||| | |||||||||| || Sbjct 6105 ATGAGAACCTTGTG-GAAAGGTTCAGTCAAGAAGTTCAGATACCAG-AGGCCAAGTGCTT 6048 Query 25692 CTACGGTTTCCAGATGGCCATCGA 25715 ||| || |||||||| || || || Sbjct 6047 CTATGGCTTCCAGATAGCAATGGA 6024 >seq120787 Length=4847 Score = 87.8 bits (96), Expect = 3e-12 Identities = 109/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 25574 ACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGA 25633 ||||| | |||||| | | |||||||||| ||||||||||| ||||||||| |||| Sbjct 1022 ACGAGTAACATTTTGTTACCCACGTGTTGGCGTTCTTTGCAGCAAGTGATGGTATCGTGA 963 Query 25634 ACGAGAATCT-GTGCGAGAGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTT 25691 | ||||| || ||| || || |||| ||||| ||| ||| | |||||||||| || Sbjct 962 ATGAGAACCTTGTG-GAAAGGTTCAGTCAAGAAGTTCAGATACCAG-AGGCCAAGTGCTT 905 Query 25692 CTACGGTTTCCAGATGGCCATCGA 25715 ||| || || ||||| || || || Sbjct 904 CTATGGCTTTCAGATTGCTATGGA 881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 925096980895360