Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq44582 82.4 9e-11 >seq44582 Length=23908 Score = 82.4 bits (90), Expect = 9e-11 Identities = 141/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 160607 TTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTT 160666 ||||| ||| |||| || || || || || |||||||| || || || || | || Sbjct 9218 TTTCATCTGTCTGACAATTTCGAGATTGGTTTTGAGCGGGAAATCCTGTCCACAAAGATT 9159 Query 160667 TATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGC 160726 ||||| || ||||||| || ||| || | ||||| |||||||| || | ||| || Sbjct 9158 GATCACATATTTCCATT-CGTGCT----TCACG-AGGTCTCTCATGCAGTTGACATCGGC 9105 Query 160727 CTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTT 160786 |||||| ||||| | |||||| ||| ||||| || || || || || || || Sbjct 9104 CTGCACTCGGCTAAATCCGGCGTACTGTACATTCTCAAGCTTGGAAGCGACGAATACATT 9045 Query 160787 ATCGAAACA--CGACACGATT 160805 ||||||||| || || |||| Sbjct 9044 ATCGAAACAGGCGGCAAGATT 9024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574890163819440