Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_020485.1 Length=34302 Score E Sequences producing significant alignments: (Bits) Value seq201746 107 4e-19 >seq201746 Length=230 Score = 107 bits (118), Expect = 4e-19 Identities = 154/206 (75%), Gaps = 11/206 (5%) Strand=Plus/Minus Query 6010 CCATTTGGTCAGAAAACACAATTTGTCGGTTGTCAAGCTTAG-TAGCAAATGACCCATAG 6068 |||| |||||||||| ||||| | | | ||||| |||| | | ||||| ||||| ||| Sbjct 209 CCATCTGGTCAGAAAG-ACAATCTTTTG--TGTCA-GCTTGGGTGGCAAACGACCCGTAG 154 Query 6069 AGGGCGTTAGAAAGTAGTTTAGCAATGG-AGCGCTGTG--TTTGGTTCTTTTCCCGATCG 6125 |||||||| || || | || || |||| ||||| | | ||||||| ||| | |||||| Sbjct 153 AGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGGGTTTTGGTT-TTTGCGCGATCG 95 Query 6126 GCTTTTTCCTTGGCCGCAATGTTTAATTGCACATATTCACGGGCTAAACAGTTCCAGCCT 6185 || ||||||||||| ||||||| ||||| ||||| || || | || ||| | Sbjct 94 GCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCAACGCACCGCCATTCG 35 Query 6186 GGAAACACGGTGGTGCGTTCGTCGGG 6211 ||||| |||| ||||| |||||||| Sbjct 34 GGAAA-GCGGT-GTGCGCTCGTCGGG 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109224511882592