Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_020487.1 Length=36838 Score E Sequences producing significant alignments: (Bits) Value seq201746 185 2e-42 >seq201746 Length=230 Score = 185 bits (204), Expect = 2e-42 Identities = 184/226 (81%), Gaps = 12/226 (5%) Strand=Plus/Minus Query 6718 GCCCTTGACGAGGGCCCCCTCCATCTGGTCAGAAAACACCGTCTTTTTATTGTCCAGCTT 6777 ||| |||| | | ||| | |||||||||||||||| || |||||| |||| ||||| Sbjct 228 GCCTTTGAGG-GTGCCGCATCCATCTGGTCAGAAAG-ACAATCTTTTG--TGTC-AGCTT 174 Query 6778 GG-TGGCGAAGGAGCCATAGAGGGCGTTGGAGAGCAATTTGGCGATGG-AGCGGAGCG-- 6833 || |||| || || || |||||||||||||| ||||| |||||||||| |||| || | Sbjct 173 GGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGGGT 114 Query 6834 TTTGGTTTTTGTCGCGATCGGCGCGTTCCTTGGCGGCGATGTTGAGTTGCACGTACTCGC 6893 ||||||||||| ||||||||||||| |||||||| |||||||| || |||||||| |||| Sbjct 113 TTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCGC 55 Query 6894 GGGCGACACAGCGCCACTCGGGGAAGACGGTGGCCCGCTCGTCGGG 6939 | || || || ||||| ||||| ||| |||| | ||||||||||| Sbjct 54 GCGCAACGCACCGCCATTCGGGAAAG-CGGT-GTGCGCTCGTCGGG 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117308604870400