Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq123332 104 3e-17 seq296590 86.0 7e-12 >seq123332 Length=7778 Score = 104 bits (114), Expect = 3e-17 Identities = 213/317 (67%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 139239 ATTCTTCTTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGAC 139298 ||||| || || || |||||||| | | |||||||| |||| || | | ||| Sbjct 518 ATTCTCCTAGCAATGTGGTGTAGTCCCTGAGGTCCATGATAAACTGCGTACATGGCTGAC 459 Query 139299 ATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATA 139358 | |||||||| || || || | ||||||||||||||||||||| || || || || ||| Sbjct 458 AGGTTTGCGAGAAGAGCCTGAGATGTGCAGATGTTACTGGTTGCCTTCTCCCTCCTGATA 399 Query 139359 TGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGAC 139418 || || || | ||| || || | | || || || || || || |||| || Sbjct 398 TGTTGTTCCCGAGTCTGAAGCGAAAGCCTCATGGCTGGGTTTCCAGCGGAGTCCTTTGTG 339 Query 139419 TGACCTACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCA 139478 ||| ||||| | ||||| |||| | ||| | |||| | |||||||| ||| Sbjct 338 ATACCAACAATGCGACCAGGCATCTGACGCTTCAGGTAGTCTTTGACGGCAAAGAAGGCA 279 Query 139479 GCATGAGGACCTCCGTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATA 139538 || || || || ||||| || | | ||||||| | || | || || | ||| || Sbjct 278 GCGTGCGGTCCACCGTAGCCTGGGGAAGTACCAAAGCGCTGACTGCTTCCAAGAGCGATG 219 Query 139539 TCAAATCCCCACTCACC 139555 |||| ||| ||||||| Sbjct 218 TCAACTCCAAACTCACC 202 >seq296590 Length=79272 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| || || | ||| || |||||||||||||| ||||||||||| || || || Sbjct 28378 ACTCCAATGGGTCCCATGCCTGGTCCTCCACCTCCATGGGGAATACAGAAAGTTTTGTGA 28319 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | ||| ||||| | ||||| | |||||||| | || || || ||||| || Sbjct 28318 AGATTAAGATGCGACACATCAGAGCCATAGTCTCCCGGGCGGCAGAGTCCCACCTGGGCG 28259 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCT 138354 || | || || ||||| || || ||||| || || | |||||| |||| Sbjct 28258 TTCATGTTGGCGCCATCTAGGTACACCTGGCCTCCGAAATGATGAACCATCT 28207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576662184880880