Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq99992 183 4e-41 >seq99992 Length=792 Score = 183 bits (202), Expect = 4e-41 Identities = 272/380 (72%), Gaps = 8/380 (2%) Strand=Plus/Plus Query 47791 GTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACA 47850 || || || ||||| || || ||||||| ||||| | ||| | |||||| ||||| | | Sbjct 333 GTTGCTATTACAAAGTCTTCTGGTTCTTTCTGTTGTAACATCAGCCACATGGCCTCTATA 392 Query 47851 TAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCT 47910 |||||| | ||||||||||| ||||| ||| || || |||||||| | | | ||||| Sbjct 393 TAATCTTTAGCATGTCCCCAATCACGTTGTGAGTCTAGGTTTCCTAG-TCTCA--AGTCT 449 Query 47911 ---TGCTTACCTTCAGAGATTGCTTTTAA-TGCTCTTGTAATCTTACGAGTTACAAAAGT 47966 |||| ||| | || || | | || |||||||| || || | || ||||| || Sbjct 450 TCCTGCTGACC-TAAGTGAATCTTCGCAACAGCTCTTGTGATTTTTCTGGTCACAAATGT 508 Query 47967 TTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTA 48026 |||||| | ||||| ||||| || || || |||||| | || ||| |||| || Sbjct 509 TTCACCTCTCCTTGGGCTCTCATGGTTGAATAGGATACCATTGCAAGCAAACATGTTATA 568 Query 48027 TGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGA 48086 | ||| | |||| | ||||||||| |||| || || || |||||||||| || Sbjct 569 GGCTTCTCTGAAGTTTATCGTGATCCAGTACGCATACAGCTTGGCTGCACCATAAGGGGA 628 Query 48087 ACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTC 48146 ||| |||||||| || |||||||| | || || ||||||| ||||| ||| | | || Sbjct 629 ACGGGGATAGAAGGGCGTGGTCTCCTTTTGGGGTATCTCTTGAACCTTGCCAAACATCTC 688 Query 48147 ACTGGTGGATGCTTGATAGA 48166 |||||| || || || |||| Sbjct 689 ACTGGTAGACGCCTGGTAGA 708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 662809180008080