Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq305029 123 3e-23 seq295142 93.3 5e-14 seq129531 87.8 2e-12 >seq305029 Length=127772 Score = 123 bits (136), Expect = 3e-23 Identities = 353/530 (67%), Gaps = 37/530 (7%) Strand=Plus/Plus Query 75505 GACAAATGGTCAATCAGATGGTATTATT-CCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 ||||||||| | || ||||| ||||| ||||||||||| || | ||| ||||| Sbjct 93564 GACAAATGGCAACTCCAATGGT-TTATTACCAATGCTTCGTGTGTACAACAATACAGCTA 93622 Query 75564 GCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAAC 75617 | |||||| |||| | || ||||| || || | || ||||| | || | Sbjct 93623 GATATGTAGATCAGGGAGGCAATAAGCGTCCT---GGTGCCTTTGCCATCTACCTAGAGC 93679 Query 75618 CATGGCATGCCGATATCATGGAGTTCCTTGAGT-TACGACTCAACCAAGGTGACGAAGAG 75676 |||||||||| |||||| || ||| | || | || || ||||| || | | ||| Sbjct 93680 CATGGCATGCTGATATCCATGATTTCTTAGACTGTAAGAAG-AACCACGG---CAAGGAG 93735 Query 75677 GCTCGGTGTA---GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGG 75733 | | | | ||||||| || | |||| ||||| || || || || |||||| || Sbjct 93736 GAACAGAGAGCCCGAGATCTGTTCTATGCCCTCTGGATCCCTGATCTCTTTATGAAGAGG 93795 Query 75734 GTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGA 75792 ||||| | | |||| | ||| | || | || || | || || || || || | Sbjct 93796 GTTGAAGCTGATGGTGACTGGACCCTCATGTGCCCTCATGAATGC-CCTGGCCTAGAAAA 93854 Query 75793 CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGA---AGAGG---AGGGTAG 75846 || ||| || || |||||| |||||| |||||||| ||| | ||||||| Sbjct 93855 CGTTTGGGGAGATGAATTTGAAAAGCTCTACGAGAAGTATGAGAAAGAAGGAAAGGGTAG 93914 Query 75847 --AGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACG 75904 || ||||| | |||| | | | ||| | || || | |||| || || Sbjct 93915 GAAGACAATGAA---GGCCCAGGCTCTG-----TGGTATGCCATCATTGAATCTCAAACA 93966 Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 |||||||| || ||||||||||| |||||||| |||||||| ||||||||||||| | Sbjct 93967 GAGACTGGTACCCCATATATGCTGTACAAGGACCATTGTAACAGGAAGAGTAACCAACAA 94026 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTA 76014 || |||||||| ||||| || || || || || || || ||||||| Sbjct 94027 AACTTGGGAACCATCAAATGCAGTAACCTGTGTACAGAGATCGTAGAGTA 94076 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 75894 AATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGA 75953 |||| || || |||||||| || ||||||||||| |||||||| |||||||| ||||| Sbjct 95651 AATCTCAAACAGAGACTGGTACCCCATATATGCTCTACAAGGACCATTGTAACAGGAAGA 95710 Query 75954 GTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGT 76013 |||||||| | || |||||||| ||||| || || || || || || || |||||| Sbjct 95711 GTAACCAACAAAACTTGGGAACCATCAAATGCAGTAACCTGTGTACAGAGATCGTAGAGT 95770 Query 76014 A 76014 | Sbjct 95771 A 95771 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 76409 CTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACT--ACGACTGGGATGTTCTCA 76466 |||||| ||| |||||||| | ||| |||| || | || ||||||||| || |||| Sbjct 98833 CTTCAGCATGACATGTGGGACG-TGACCCCAA-CTGACCTCCACGACTGGGCTGCCCTCA 98890 Query 76467 AGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAG 76526 ||| |||| || | || | |||||||||||| | | || || |||||||| | Sbjct 98891 AGGCCGACATCGCCAAGCACGGCGTCCGTAACAGTCTTCTCCTCGCTCCCATGCCAACTG 98950 Query 76527 CCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCT 76586 | |||||||| || ||| | ||||| || |||| | | || || ||||| | || |||| Sbjct 98951 CATCCACCGCTCAGATCCTTGGTAACAACGAATCCATCGAGCCGTACACCAGTAATATCT 99010 Query 76587 AC 76588 || Sbjct 99011 AC 99012 >seq295142 Length=2525 Score = 93.3 bits (102), Expect = 5e-14 Identities = 268/408 (66%), Gaps = 12/408 (3%) Strand=Plus/Minus Query 65101 GTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGT 65160 || ||||| ||||||||||| || || || ||| || | ||| | ||||| || ||| Sbjct 1927 GTAGAGGGCATCTTCTTCTCGGGTTCCTTTGCCGCAATCTTCTGGCTCAAGAAACGAGGT 1868 Query 65161 CTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAG 65220 || |||||||| || ||||||||||||||| || | |||| |||||||| ||| Sbjct 1867 CTGATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGACGAGGGTCTTCACTGC 1808 Query 65221 GAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGACCCACTACCGAAAC---TATC 65277 || ||||| | | |||||| | | || | | ||| | ||| | | || Sbjct 1807 GACTTTGCATGTCTGATGTTCAAGCATCTCAACAACA-AGCCA--TCGGAAGCTCATGTC 1751 Query 65278 CACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCA 65337 || | ||| | | || |||||| |||| || | | |||| | |||||| || || Sbjct 1750 CAGGGGATCATCAGGGAAGCGGTTAAGATCGAACAGGAGTTCCTGACGGACGCTCTACCC 1691 Query 65338 TGTAATCTCATCGGTATGAACTCTG---AGAAGATGTCCGAGTACATTGAGTATGTGTCG 65394 || ||||||||||||||| | | | || | || ||||| |||| ||| | Sbjct 1690 TGCTCTCTCATCGGTATGAATGCCGGCCTCATGAAGACC---TACATCGAGTTTGTAGCC 1634 Query 65395 GATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATTTGGAACGCGAAGAATCCATTTGAC 65454 || | | || | ||| | || ||||| | |||| ||||| ||| Sbjct 1633 GACAGGTTGCTTGTTGAGCTTGACTGTAAAAAGATCTGGAATGTCGAGAACCCATTCGAC 1574 Query 65455 TTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 || ||||||||||| || || || ||||| ||||||||||||||| Sbjct 1573 TTCATGGAAAACATCTCGCTGGAAGGAAAGACGAACTTCTTTGAGAAG 1526 >seq129531 Length=564 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 65101 GTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGG 65159 || ||||| ||||||||||| || || || ||| || || | ||| | ||||| || || Sbjct 238 GTAGAGGGCATCTTCTTCTCGGGTTCCTT-TGCTGCGATCTTCTGGCTCAAGAAACGAGG 296 Query 65160 TCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCA 65219 ||| |||||||| || ||||||||||||||| || | |||| |||||||| ||| Sbjct 297 TCTGATGCCAGGGCTTACCTTCTCAAATGAACTCATCAGCAGAGACGAGGGTCTTCACTG 356 Query 65220 GGAGTTTGCC 65229 || |||||| Sbjct 357 CGACTTTGCC 366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594162486406720