Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_021168.1 Length=34391 Score E Sequences producing significant alignments: (Bits) Value seq201746 183 7e-42 >seq201746 Length=230 Score = 183 bits (202), Expect = 7e-42 Identities = 170/208 (82%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 5690 TCCATTTGGTCAGAAAAGACAATCTTTTTATTGTCAAGTTTGGTGGCAAACGACCCGTAG 5749 ||||| |||||||||| ||||||||||| ||||| || ||||||||||||||||||| Sbjct 210 TCCATCTGGTCAGAAA-GACAATCTTTTG--TGTCAGCTTGGGTGGCAAACGACCCGTAG 154 Query 5750 AGGGCGTTAGATAGCAATTTGGCAATGGAA-CGTAAAG-TTTGAtttttttCACGGTCGG 5807 |||||||| || ||||| ||||| |||| | || | | ||| ||||| | || |||| Sbjct 153 AGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGGGTTTTGGTTTTTGCGCGATCGG 94 Query 5808 CCCGCTCCTTGGCCGCGATGTTAAGTTGTACGTACTCCCGGGCCACGCAGCGCCACTCCG 5867 | |||||||||||||||||||| || || ||||| || || || ||||| ||||| | || Sbjct 93 CGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTCGCGCGCAACGCACCGCCA-TTCG 35 Query 5868 GGAAAACAGTAGTGCGCTCGTCGGGCAC 5895 ||||| | || ||||||||||||||||| Sbjct 34 GGAAAGCGGT-GTGCGCTCGTCGGGCAC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109508220193284