Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq295142 118 2e-21 >seq295142 Length=2525 Score = 118 bits (130), Expect = 2e-21 Identities = 376/580 (65%), Gaps = 8/580 (1%) Strand=Plus/Plus Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 ||| ||||| || ||| | ||| || |||||| || | ||| || || || | Sbjct 1796 ACATGCAAAGTCGCAGTGAAGACCCTCGTCTCTGCTGATGAGTTCATTTGAGAAGGTAAG 1855 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 ||| ||||| | ||||| ||| || ||||| || || | || || || || ||||| Sbjct 1856 CCCTGGCATCAGACCTCGTTTCTTGAGCCAGAAGATTGCGGCAAAGGAACCCGAGAAGAA 1915 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA-CTGTATTTATTGCTCA 18335 || ||||| || ||||| || | | ||| | |||| ||| | | ||| Sbjct 1916 GATGCCCTCTACTGCTGCGAAAGCAACGACCCTTGTACCAAAGTCTGCGCTG-TCGCTAC 1974 Query 18336 GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 ||||| | | ||||||| ||| | |||||| || |||| | |||| Sbjct 1975 TGATCCAGTCCAGCGCCCATTGCGCTTTCTTGGTGACACACGGCATGGTCTCAACGGCAT 2034 Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455 | || | | |||| | | |||||||| || || |||||||| | || ||||||| Sbjct 2035 TGAAGAGGTAATCTCTCTGAGCTGAATCTTTGATGTATGTGTCGATGAGTAATGAATACA 2094 Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGAT 18515 |||| || || ||| |||| || || ||||| || | || || | || ||||| | | Sbjct 2095 TTTCTGAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTCGCCTCTGCAA 2154 Query 18516 ATTGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 || | || | ||| ||| ||||| ||||| |||||||| || ||||| || | Sbjct 2155 TCTGCACTTCTTGGCT---AAACCTTTCAACCAAGTTCTCATTGACAATACCATCGCTTG 2211 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC 18632 ||||| || || | ||||| ||||| || | ||||| || |||| ||| || Sbjct 2212 CAGCGAAGAAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTGGCCC 2271 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | | || | ||||| || ||||| || || || | ||||| || |||| || |||| Sbjct 2272 AATGGTCCAAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCCGCCT 2331 Query 18693 GTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 ||||| | || | || || | || ||| || || || Sbjct 2332 TCTTGTAGAATTGCCAGATGTCATGATATTGGATGGGGAA 2371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728918951370400