Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq305029 113 1e-19 seq295142 95.1 4e-14 >seq305029 Length=127772 Score = 113 bits (124), Expect = 1e-19 Identities = 339/515 (66%), Gaps = 9/515 (2%) Strand=Plus/Minus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 || ||||| ||||| ||||||||| | |||||||| || || || | |||||| Sbjct 94076 TACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTTCCCAAGTTTTGTTGGTTA 94017 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 || ||||||||| |||||||| || || |||||||| || ||||| | || | Sbjct 94016 CTCTTCCTGTTACAATGGTCCTTGTACAGCATATATGGGGTACCAGTCTCTGTTTGAGAT 93957 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810 || | || ||| || | |||| || ||| ||| | | ||||| | Sbjct 93956 TCAATGATGGCATACCACAGAGCCTGGGCCTTCATTGTCTTCCTACCCTTTCCTTCTTTC 93897 Query 155811 TCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAA-CAATCACTCAGTCCAGGGCA 155869 ||||| ||| || ||| || | || || || || | | || || |||||||| Sbjct 93896 TCATACTTCTCGTAGAGCTTTTCAAATTCATCTCCCCAAACGTTTTCT-AGGCCAGGGCA 93838 Query 155870 CTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATC 155929 | || ||||| | || | ||| || | | || | || |||||| | ||| Sbjct 93837 TTCATGAGGGCACATGAGGGTCCAGTCACCATCAGCTTCAACCCTCTTCATAAAGAGATC 93778 Query 155930 ACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCT 155988 | ||| | |||||||| || || | || || || ||||| | |||||| |||| Sbjct 93777 AGGGATCCAGAGGGCATAGAACAGATCTCGGGCTCTCTGT-TCCTCCTTGCCGTGGTTCT 93719 Query 155989 TCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAAC 156048 || |||||||| || | ||||||| ||| |||||| || || || ||||| Sbjct 93718 TCTTACAGTCTAAGAAATCATGGATATCAGCATGCCATGGCTCTAGGTAGATGGCAAAGG 93659 Query 156049 TACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| | ||| ||| |||||||||||||| | ||| || || ||| | |||| | Sbjct 93658 CACCAGGACGCTTATTGCCTCCCTGATCTACATATCTAGCTGTATTGTTGTACACACGAA 93599 Query 156106 GCATAGG-AATAATACCATTGGAAGTGCCATTGGT 156139 |||| || ||||| ||||||||| ||||||| || Sbjct 93598 GCATTGGTAATAA-ACCATTGGAGTTGCCATTTGT 93565 >seq295142 Length=2525 Score = 95.1 bits (104), Expect = 4e-14 Identities = 334/510 (65%), Gaps = 14/510 (3%) Strand=Plus/Minus Query 133154 GAAGTAGATTTATCCAAAGACCCAGCCCACTGGG--AAGCCCTTACTGGGGATGAAAAAC 133211 || || ||| | ||||||||| | ||| |||| |||| | || | |||| | | Sbjct 2302 GAGGTCGATCTTTCCAAAGACTTGGACCATTGGGCCAAGCTC--ACAGACAATGAGAGGC 2245 Query 133212 ATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAAT 133270 | || || || ||| | || || || || ||||| || ||||||||||| ||| || Sbjct 2244 ACTTCATCTCGCATGTTCTT-GCTTTCTTCGCTGCAAGCGATGGTATTGTCAATGAGAAC 2186 Query 133271 TTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTA 133330 || | | |||||| |||||| || | || || || | || || ||| | Sbjct 2185 TTGGTTGAAAGGTTTAGCCAAGAAGTGCAGATTGCAGAGGCGAGGTGTTTCTACGGGTTC 2126 Query 133331 CAGATTGCGATGGAAAATATCCATTCTATCACATATTC--TACTCTAATTGATACTTACA 133388 |||||||| || ||||| ||||| || | ||||| ||||| || || || |||| Sbjct 2125 CAGATTGCAATTGAAAACATCCACTCAGAAATGTATTCATTACTC--ATCGACACATACA 2068 Query 133389 TCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGAATTT-CCTTGTATT 133447 |||||||| | | |||| | | || ||||| ||| || | || | || ||| | Sbjct 2067 TCAAAGATTCAGCTCAGAGAGATTACCTCTTCAATGCCGTT-GAGACCATGCCGTGTGTC 2009 Query 133448 AAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGA-CAAGCGTGCGAGTTTTGCTAC 133506 | |||||| | | ||||| | | |||||| || | | | | || |||| ||| Sbjct 2008 ACCAAGAAAGCGCAATGGGCGCTGGACTGGATC-AGTAGCGACAGCGCAGACTTTGGTAC 1950 Query 133507 TCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTAT 133566 | |||||||||| || | |||||||||||| || ||| ||| | || | | || Sbjct 1949 AAGGGTCGTTGCTTTCGCAGCAGTAGAGGGCATCTTCTTCTCGGGTTCCTTTGCCGCAAT 1890 Query 133567 TTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTC 133626 || ||||| || || || ||| | | || || || || || || ||||| || Sbjct 1889 CTTCTGGCTCAAGAAACGAGGTCTGATGCCAGGGCTTACCTTCTCAAATGAACTCATCAG 1830 Query 133627 AAGGGACGAGGCACTTCACACCGAATTTGC 133656 || ||||||| |||||| ||| ||||| Sbjct 1829 CAGAGACGAGGGTCTTCACTGCGACTTTGC 1800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1465730459529578