Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq295142 129 7e-24 seq426 111 2e-18 seq212800 105 8e-17 seq99741 102 1e-15 seq256343 98.7 1e-14 seq240812 95.1 1e-13 seq129531 93.3 5e-13 seq321684 91.5 2e-12 seq274680 87.8 2e-11 seq317886 86.0 8e-11 >seq295142 Length=2525 Score = 129 bits (142), Expect = 7e-24 Identities = 199/284 (70%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| || || || |||||||| ||||| || |||| ||||||| | || Sbjct 2100 GAGTGGATGTTTTCAATTGCAATCTGGAACCCGTAGAAACACCTCGCCTCTGCAATCTGC 2159 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || | | |||| | ||| |||||| || || || ||||| || ||||| Sbjct 2160 ACTTCTTGGCTAAACCTTTCAACCAAGTTCTCATTGACAATACCATCGCTTGCAGCGAAG 2219 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| || || ||| ||| ||||| | ||| | ||| ||||| |||| ||| | Sbjct 2220 AAAGCAAGAACATGCGAGATGAAGTGCCTCTCATTGTCTGTGAGCTTGGCCCAATGGTCC 2279 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| | || || ||||||||||| ||||||| || ||||| ||||| ||||| Sbjct 2280 AAGTCTTTGGAAAGATCGACCTCCTCGGCCGTCCAGAAGGATGCCTCCGCCTTCTTGTAG 2339 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCG 869916 | | ||| | | || || |||| ||||||| ||||||||| Sbjct 2340 AATTGCCAGATGTCATGATATTGGATGGGGAAGATGACAAAGCG 2383 Score = 95.1 bits (104), Expect = 1e-13 Identities = 202/295 (68%), Gaps = 5/295 (2%) Strand=Plus/Plus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 ||| || ||||| ||||| || || |||||||| ||||| | ||| ||||| Sbjct 1529 CTCAAAGAAGTTCGTCTTTCCTTCCAGCGAGATGTTTTCCATGAAGTCGAATGGGTTCT- 1587 Query 868777 CGTC-TTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGA 868835 || | || || ||||| || | ||| | |||| | |||||| |||||||||| Sbjct 1588 CGACATTCCAGATCTTTTTACAGTCAAGCTCAACAAGCAACCTGTCGGCTACAAACTCGA 1647 Query 868836 TGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCA 868895 |||| |||||||||||| ||||| |||||||| | || || | || ||| Sbjct 1648 TGTAGGTCTTCATGAGGCCGGCATTCATACCGATGAGAGAGCAGGGTAGAGCGTCCGTCA 1707 Query 868896 CAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTGGGCACG-TCGGCCGAG 868954 ||||| | ||||||| || || || ||||||| ||||| || | | |||| Sbjct 1708 GGAACTCCTGTTCGATCTTAACCGCTTCCCTGATGATC-CCCTGGACATGAGCTTCCGAT 1766 Query 868955 GGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAGTGCA-ACCCT 869008 ||||||||| ||| | || | | ||| || |||||||||||||| | ||||| Sbjct 1767 GGCTTGTTGTTGAGATGCTTGAACATCAGACATGCAAAGTCGCAGTGAAGACCCT 1821 >seq426 Length=52863 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| | | || || || || | |||||||| ||| || ||| || Sbjct 26459 GCTTGGCCAATTCACCGGGGAGGAGGAGACGGACAGAGGTCTGGACCTCACGGCTGCTGA 26518 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| | || || |||||| ||||| | | || || |||| | Sbjct 26519 TGGTGGACTTCTTGTTGTACTGGGCAAGACGGGAAGCCTCACCGGCAATACGCTCGAAGA 26578 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||| || |||||||| ||||| | |||| | |||||||| |||||||| Sbjct 26579 CATCGTTGACGAAGCTGTTCATGATGGACATAGCCTTGCTTGAGATGCCAGTGTCGGGGT 26638 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| || |||||||||||| Sbjct 26639 GAACCTGCTTCAGAACCTTGTAGATG 26664 >seq212800 Length=67504 Score = 105 bits (116), Expect = 8e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| | | || || || || |||||||||| ||| || ||| || Sbjct 60694 GCTTGGCCAATTCACCGGGGAGGAGGAGACGGACAGCGGTCTGGACCTCACGGCTGCTGA 60753 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| |||| || ||||| ||||| | ||||||| |||| | Sbjct 60754 TGGTGGACTTCTTGTTGTAGTGGGCAAGACGAGATGCCTCACCGGCGATGCGCTCGAAGA 60813 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||| || |||||||| ||||| | | | ||||| || |||||||| Sbjct 60814 CATCGTTGACGAAGCTGTTCATGATGGACATGGCACGGCTTGAGATACCAGTGTCGGGGT 60873 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| || |||||||||||| Sbjct 60874 GAACCTGCTTCAGAACCTTGTAGATG 60899 >seq99741 Length=161213 Score = 102 bits (112), Expect = 1e-15 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| | | || || || || | ||||| | ||| || ||| || Sbjct 130850 GCTTGGCCAATTCACCGGGGAGGAGGAGACGGACTGATGTCTGAACCTCACGGCTGCTGA 130909 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| || |||||| ||||| | ||||||| |||| | Sbjct 130910 TGGTGGACCTCTTGTTGTAGTGGGCAAGACGGGATGCCTCACCGGCGATGCGCTCGAAGA 130969 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||| ||||| | | | ||||| || |||||| | Sbjct 130970 CGTCGTTGACGAAGCTGTTCATGATGGACATGGCACGGCTTGAGATACCAGTGTCGGGAT 131029 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| || |||||||||||| Sbjct 131030 GGACCTGCTTCAGAACCTTGTAGATG 131055 >seq256343 Length=109058 Score = 98.7 bits (108), Expect = 1e-14 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 869715 CCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAA 869774 |||||||||| ||||| || |||||||| || || ||||| || || ||| ||| | Sbjct 29697 CCAGGTTCTCATTGACGATACCATCGCTGGCAGCAAAGAAAGCAAGAACATGCGAGATGA 29638 Query 869775 AGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGTGTCGGCGCTGAGGTCCACCT 869834 |||| | ||| | ||| ||||| |||| || | ||| | || || |||| Sbjct 29637 AGTGCCTCTCATTGTCTGTGAGCTTGGCCCAATGTTCCAGGTCTTTGGAAAGATCGACCT 29578 Query 869835 CCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGGTAGC 869894 ||||||| ||||||| || ||||||||||| ||||| | | ||| | | || || Sbjct 29577 CCTCGGCCGTCCAGAAGGATGCCTCGGCCTTCTTGTAGAATTGCCAGATGTCGTGATATT 29518 Query 869895 GGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 |||| ||||| | ||| ||||| |||||| || Sbjct 29517 GGATGGGGAAAATGACGAAGCGCCGGGGGTTCTC 29484 Score = 89.7 bits (98), Expect = 6e-12 Identities = 142/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||| | |||||| |||||||||||||| |||||||||||| ||||| |||||| Sbjct 32517 AGCAACCTGTCGGCCACAAACTCGATGTAGGTCTTCATGAGGCCGGCATTCATACCGATG 32458 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || | || || | || ||| ||||| | ||||||| ||| || || |||| Sbjct 32457 AGAGAGCAGGGTAGGGCGTCCGTCAGGAACTCCTGTTCGATCTTGACCGCTTCCCTGATG 32398 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 ||| ||||| || | | |||| ||||||||| ||| || | | ||| ||||| Sbjct 32397 ATC-CCCTGGACATGAGCTTCCGATGGCTTGTTGTTGAGATGTTTGAACATCAGACAGGC 32339 Query 868990 AAAGTCGCAGTGCA-ACCCT 869008 ||||||||| || | ||||| Sbjct 32338 AAAGTCGCAATGAAGACCCT 32319 >seq240812 Length=378 Score = 95.1 bits (104), Expect = 1e-13 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 1254366 ATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGA-GTG 1254424 |||||||| || || ||||||| ||||| | |||||| |||||| | ||| Sbjct 342 ATCAGGCGGACTGCTGTCTGGACTTCGCGACTCGTAATCGTGAACTTCTTGTTGTACGTG 283 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||||||| ||| ||||| |||| || |||| ||||||||||| || |||||| Sbjct 282 -GCCAGACGGGCGGACTCGGCTGCGATTCGCTCGAAGATGTCGTTGACGAAGCTGTTCAT 224 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 | ||||| | | ||||||||||| |||||| || ||||| || | || ||||| Sbjct 223 AATGGACATGGCGCGGCTGGAGATGCCCGTGTCGGGATGAACCTGTTTCAAGACTTTGTA 164 Query 1254545 GATG 1254548 |||| Sbjct 163 GATG 160 >seq129531 Length=564 Score = 93.3 bits (102), Expect = 5e-13 Identities = 143/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||| | |||||| |||||||||||||| |||||||||||| ||||| |||||| Sbjct 542 AGCAACCTGTCGGCCACAAACTCGATGTAGGTCTTCATGAGGCCGGCATTCATACCGATG 483 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || | || || | || ||| ||||| | ||||||| ||| || || |||| Sbjct 482 AGAGAGCAGGGTAGGGCGTCCGTCAGGAACTCCTGTTCGATCTTGACCGCTTCCCTGATG 423 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 ||| ||||| || | | |||| ||||||||| ||| || | | ||| ||||| Sbjct 422 ATC-CCCTGGACATGAGCTTCCGATGGCTTGTTGTTGAGATGTTTGAACATCAGACAGGC 364 Query 868990 AAAGTCGCAGTGCA-ACCCT 869008 |||||||||||| | ||||| Sbjct 363 AAAGTCGCAGTGAAGACCCT 344 >seq321684 Length=45064 Score = 91.5 bits (100), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 ||||||||||||||||| ||||| || ||| ||| || |||||| | || ||| Sbjct 37428 AGGCGCACGGCGGTCTGTATCTCACGACTGCTGATGGTAGATTTCTTGTTGTACTGGGCC 37369 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 || || || || ||| | | || || |||| ||||||||||| || |||||||| | Sbjct 37368 AGCCGACCAGCTTCGCCGGCAATCCGCTCGAAGATGTCGTTGACGAAGCTGTTCATGATC 37309 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||| | | | || || || || ||||| |||||||| || || ||||||||| Sbjct 37308 GTCATGGCCCGGCCAGAAATTCCGGTATCAGGGTGAACCTGCTTAAGGACTTTGTAGATG 37249 Score = 91.5 bits (100), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 ||||||||||||||||| ||||| || ||| ||| || |||||| | || ||| Sbjct 40881 AGGCGCACGGCGGTCTGTATCTCACGACTGCTGATGGTAGATTTCTTGTTGTACTGGGCC 40822 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 || || || || ||| | | || || |||| ||||||||||| || |||||||| | Sbjct 40821 AGCCGACCAGCTTCGCCGGCAATCCGCTCGAAGATGTCGTTGACGAAGCTGTTCATGATC 40762 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||| | | | || || || || ||||| |||||||| || || ||||||||| Sbjct 40761 GTCATGGCCCGGCCAGAAATTCCGGTATCAGGGTGAACCTGCTTAAGGACTTTGTAGATG 40702 >seq274680 Length=38270 Score = 87.8 bits (96), Expect = 2e-11 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||||||| ||| | | || || || || | ||||||| ||| || ||| ||| | Sbjct 5620 TGGCCAGTTCACCGGGGAGGAGGAGACGGACTGAAGTCTGGACCTCACGGCTGCTGATGG 5679 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || |||||| | || || |||||| ||||| | | || || |||| | | Sbjct 5680 TGGACTTCTTGTTGTACTGGGCAAGACGGGAAGCCTCACCGGCAATACGTTCGAAGACAT 5739 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||| ||||| | | | ||||| || |||||| || | Sbjct 5740 CGTTGACGAAGCTGTTCATGATGGACATGGCACGGCTTGAGATACCAGTGTCGGGATGGA 5799 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| || |||||||||||| Sbjct 5800 CCTGCTTCAGAACCTTGTAGATG 5822 >seq317886 Length=47818 Score = 86.0 bits (94), Expect = 8e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 507735 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGG 507794 |||||||||||||||||||||| |||||||||||||| ||||| || |||||| | | Sbjct 23914 CCTACAACGCCGACTTTGACGGAGACGAGATGAACCTTCACGTTCCTCAGTCCATGGAGA 23855 Query 507795 CGCGCGCCGAGGTGACGCACACCAT 507819 || | || ||||||||| | | ||| Sbjct 23854 CGAGAGCGGAGGTGACGGAGATCAT 23830 Score = 86.0 bits (94), Expect = 8e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 507735 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGG 507794 |||||||||||||||||||||| |||||||||||||| ||||| || |||||| | | Sbjct 26589 CCTACAACGCCGACTTTGACGGAGACGAGATGAACCTTCACGTTCCTCAGTCCATGGAGA 26530 Query 507795 CGCGCGCCGAGGTGACGCACACCAT 507819 || | || ||||||||| | | ||| Sbjct 26529 CGAGAGCGGAGGTGACGGAGATCAT 26505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6080649212715698