Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq283656 109 5e-19 seq80839 104 2e-17 seq172955 96.9 3e-15 seq15040 91.5 1e-13 seq233793 89.7 5e-13 seq177272 87.8 2e-12 seq305346 84.2 2e-11 seq171612 82.4 7e-11 >seq283656 Length=776 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| | || || ||||| || || ||||| || ||| ||| || || | |||| Sbjct 772 AAAACATTGACGGGGAAAACCATCACCCTCGAGGTGGAACCCAGTGATACTATTGAAAAT 713 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 ||||| || || |||||||| ||||| || ||||||||||| || || ||||||| Sbjct 712 GTAAAGGCCAAAATTCAAGACAAGGAAGGTATCCCTCCCGATCAGCAGCGCCTGATCTTC 653 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 ||||| || |||||||| ||| | | |||| || || || || || ||||| || Sbjct 652 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCTGACTACAATATCCAGAAGGAGTCC 593 Query 24899 ACACTACACTTGGTG 24913 || || ||||||||| Sbjct 592 ACCCTCCACTTGGTG 578 >seq80839 Length=604 Score = 104 bits (114), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || || ||||| || || || || || | | Sbjct 3 GATGCAGATATTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGCCTTC 62 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||| | || || |||||||| || |||||||| || ||||| || || Sbjct 63 TGACACCATAGAGAATGTCAAGGCTAAGATCCAGGATAAAGAAGGTATTCCTCCTGACCA 122 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||||||||||| || || || ||||| || ||| | | | | ||||| || || Sbjct 123 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTATCAGACTACAA 182 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 ||| || |||||||| || || || |||| Sbjct 183 CATCCAGAAGGAATCAACCCTCCATCTTG 211 >seq172955 Length=397 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | | Sbjct 95 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGC 154 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||| || ||||| ||||| || || |||||||| Sbjct 155 GACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGATCAG 214 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || || || |||||| | | | ||||| || ||| Sbjct 215 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTATCAGACTACAAC 274 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || |||||||| || || || || |||| Sbjct 275 ATCCAAAAGGAGTCAACTCTCCATCTTG 302 >seq15040 Length=705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || || | | Sbjct 322 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT 381 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||| || ||||| ||||| || || |||||||| Sbjct 382 GACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGATCAG 441 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || || || ||||| | | | ||||| || ||| Sbjct 442 CAGCGTCTAATCTTCGCTGGAAAGCAACTCGAGGACGGCCGCACTCTATCAGACTACAAC 501 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || |||||||| || || || Sbjct 502 ATCCAGAAGGAATCTACTCTCCA 524 >seq233793 Length=42987 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | Sbjct 13244 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 13185 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | |||| | |||||| |||||||| ||||| || || || ||||| Sbjct 13184 GACACCATCGAGAATGTAAGGC-AAAGATTCAAGACAAGGAAGGCATTCCCCCTGATCAG 13126 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || || ||||| ||| | | ||||||| || ||| Sbjct 13125 CAGCGTCTCATCTTCGCTGGCAAGCAACTGGAAGATGGCCGCACTCTGTCAGACTACAAC 13066 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 13065 ATCCAGAAGGAGTCAACTCTCCATCTTG 13038 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | Sbjct 13017 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 12958 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||| || ||||| ||||| || || |||||||| Sbjct 12957 GACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGATCAG 12898 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || || || ||||| | | | ||||| || ||| Sbjct 12897 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGACGGCCGCACTCTATCAGACTACAAC 12838 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || |||||||| || || || || Sbjct 12837 ATCCAAAAGGAGTCAACTCTCCA 12815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | Sbjct 13700 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATAACTCTTGAGGTTGAGCCAAGT 13641 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||| || ||||| ||||| || || || ||||| Sbjct 13640 GACACCATCGAGAACGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCCCCTGATCAG 13581 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || || |||||||| | | | ||||| || ||| Sbjct 13580 CAGCGTCTCATCTTCGCTGGCAAGCAACTGGAGGACGGCCGCACTCTATCAGACTACAAC 13521 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 13520 ATCCAGAAGGAGTCAACTCTCCATCTTG 13493 >seq177272 Length=310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || || | | Sbjct 238 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT 179 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||| |||||||| ||||| || || || ||||| Sbjct 178 GACACCATCGAGAATGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCCCCTGATCAG 119 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || || ||||| || | | | ||||| || ||| Sbjct 118 CAGCGTCTCATCTTCGCTGGCAAGCAACTGGAAGACGGCCGCACTCTATCAGACTACAAC 59 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 58 ATCCAGAAGGAGTCAACTCTCCATCTTG 31 >seq305346 Length=360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | Sbjct 318 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 259 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||| || ||||| ||||| || || || ||||| Sbjct 258 GACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCCCCTGATCAG 199 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || || || || || | | | ||||| || ||| Sbjct 198 CAGCGTCTCATCTTTGCTGGCAAGCAACTCGAAGACGGCCGCACTCTATCAGACTACAAC 139 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || |||||||| || || || || |||| Sbjct 138 ATCCAAAAGGAGTCAACTCTCCATCTTG 111 >seq171612 Length=420 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | | Sbjct 259 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTTGAGCCAAGC 318 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||| || ||||||||||| || || || ||||| Sbjct 319 GACACCATCGAGAATGTCAAAGCAAAGATTCAGGACAAAGAAGGCATTCCCCCTGATCAG 378 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| | ||||| || || || || || ||||| Sbjct 379 CAGCGTCTCATCTTCGCTGGCAAGCAACTCGAGGA 413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448082296926320