Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_022266.1 Length=31967 Score E Sequences producing significant alignments: (Bits) Value seq201746 219 9e-53 >seq201746 Length=230 Score = 219 bits (242), Expect = 9e-53 Identities = 199/238 (84%), Gaps = 12/238 (5%) Strand=Plus/Minus Query 6214 ATGCTTTTGACGGTGGCGGGGTCCATCTGGTCAGAAAAGACGATCTTTTTGTTGTCCAGC 6273 |||| ||||| |||| || |||||||||||||||| ||| ||||||| |||| ||| Sbjct 230 ATGCCTTTGAGGGTGCCGCA-TCCATCTGGTCAGAAA-GACAATCTTTTG--TGTC-AGC 176 Query 6274 TTGG-TGGCGAACGACCCGTAGAGGGCGTTGGAGAGCAGCTTGGCGATGG-AGCGCAGGG 6331 |||| |||| ||||||||||||||||||||||| |||| ||||||||||| ||||||||| Sbjct 175 TTGGGTGGCAAACGACCCGTAGAGGGCGTTGGACAGCAACTTGGCGATGGGAGCGCAGGG 116 Query 6332 --TCTGGTTCTTCTCGCGGTCGGCGCGCTCCTTGGCGGCGATGTTGAGCTGGACGTACTC 6389 | ||||| || |||| ||||||||||||||||| |||||||| ||||| ||||| || Sbjct 115 GTTTTGGTTTTTG-CGCGATCGGCGCGCTCCTTGGCCGCGATGTTTAGCTGCACGTATTC 57 Query 6390 GCGGGCCACGCAGCGCCATTCGGGGAAGACGGTGGCGCGCTCGTCCGGCAGGAGGCGC 6447 ||| || ||||| ||||||||||| ||| |||| | ||||||||| |||| ||| || Sbjct 56 GCGCGCAACGCACCGCCATTCGGGAAAG-CGGT-GTGCGCTCGTCGGGCACCAGGTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101781153394212