Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq80839 123 2e-23 >seq80839 Length=604 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || || ||||| || || ||||| || || | | |||||| Sbjct 219 ACGAAGAACAAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCTGATAGGGTGCGGCC 160 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || |||||||| | ||||| | ||||| || || |||||||| ||||| Sbjct 159 ATCTTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGAATACCTTCTTT 100 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || |||||| | |||| ||||||||| | || || ||||| || || Sbjct 99 ATCCTGGATCTTAGCCTTGACATTCTCTATGGTGTCAGAAGGCTCCACCTCAAGGGTGAT 40 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| || | ||| || || ||||||||||| Sbjct 39 AGTCTTGCCCGTCAGGGTCTTCACGAATATCTGCAT 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383703727683954