Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq22163 95.1 2e-14 seq300120 84.2 3e-11 seq261220 84.2 3e-11 seq251165 84.2 3e-11 seq237233 84.2 3e-11 seq199914 84.2 3e-11 seq160937 84.2 3e-11 seq53756 84.2 3e-11 seq165153 82.4 1e-10 >seq22163 Length=58862 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 52929 TCCTCGGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 52988 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 52989 CCCGCCGGGGAG 53000 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 53094 TCCTCGGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 53153 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 53154 CCCGCCGTGGAG 53165 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 52926 CAATCCTCGGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 52985 Query 11786 TTCCCCGACGAGGAG 11800 ||||||| || |||| Sbjct 52986 TTCCCCGCCGGGGAG 53000 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 53091 CAATCCTCGGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 53150 Query 11786 TTCCCCGACGAGGAG 11800 ||||||| || |||| Sbjct 53151 TTCCCCGCCGTGGAG 53165 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 53000 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 52941 Query 139413 TACTAACGAGGATT 139426 ||||| |||||||| Sbjct 52940 TACTACCGAGGATT 52927 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 53165 CTCCACGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 53106 Query 139413 TACTAACGAGGATT 139426 ||||| |||||||| Sbjct 53105 TACTACCGAGGATT 53092 >seq300120 Length=38411 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||| | |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||| Sbjct 22839 ATTCCTTGGTAGTATAGTGGTAAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGAT 22898 Query 8716 TCCCCGACGAGGAG 8729 |||||| | ||||| Sbjct 22899 TCCCCGCCAAGGAG 22912 >seq261220 Length=54797 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 8654 TTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCG 8713 ||| |||| | |||||||||||| ||||| ||| ||||| | ||| ||||||||||||| Sbjct 15416 TTAATCCTTGGTAGTATAGTGGTAAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCG 15475 Query 8714 ATTCCCCGACGAGGAG 8729 |||||||| | ||||| Sbjct 15476 ATTCCCCGCCAAGGAG 15491 >seq251165 Length=82011 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||| | |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||| Sbjct 20638 ATTCCTTGGTAGTATAGTGGTAAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGAT 20579 Query 8716 TCCCCGACGAGGAG 8729 |||||| | ||||| Sbjct 20578 TCCCCGCCAAGGAG 20565 >seq237233 Length=57547 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||| | |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||| Sbjct 36770 ATTCCTTGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGAT 36711 Query 8716 TCCCCGACGAGGAG 8729 |||||| | ||||| Sbjct 36710 TCCCCGCCAAGGAG 36697 >seq199914 Length=356444 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 11722 TAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGG 11780 ||||| | |||| | |||||||||||| ||||| ||| ||||| | ||| ||||||||| Sbjct 131780 TAACCAATTCCTTGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGG 131721 Query 11781 TTCGATTCCCCGACGAGGAGG 11801 |||||||||||| | |||||| Sbjct 131720 TTCGATTCCCCGCCAAGGAGG 131700 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||| | |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||| Sbjct 131774 ATTCCTTGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGAT 131715 Query 8716 TCCCCGACGAGGAG 8729 |||||| | ||||| Sbjct 131714 TCCCCGCCAAGGAG 131701 >seq160937 Length=75995 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 11722 TAACCCAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGG 11780 ||||| | |||| | ||||||||||||| |||| ||| ||||| | ||| ||||||||| Sbjct 10726 TAACCAATTCCTTGGTAGTATAGTGGTAAGTATCTCCGCCTGTCACGCGGAAGACCGGGG 10667 Query 11781 TTCGATTCCCCGACGAGGAGG 11801 |||||||||||| | |||||| Sbjct 10666 TTCGATTCCCCGCCAAGGAGG 10646 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||| | |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||| Sbjct 10720 ATTCCTTGGTAGTATAGTGGTAAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGAT 10661 Query 8716 TCCCCGACGAGGAG 8729 |||||| | ||||| Sbjct 10660 TCCCCGCCAAGGAG 10647 >seq53756 Length=39316 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||| | |||||||||||| ||||| ||| ||||| | ||| ||||||||||||||| Sbjct 38029 ATTCCTTGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGAT 37970 Query 8716 TCCCCGACGAGGAG 8729 |||||| | ||||| Sbjct 37969 TCCCCGCCAAGGAG 37956 Score = 82.4 bits (90), Expect = 1e-10 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 11723 AACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGT 11781 |||| | |||| | |||||||||||| ||||| ||| ||||| | ||| |||||||||| Sbjct 38034 AACCAATTCCTTGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGT 37975 Query 11782 TCGATTCCCCGACGAGGAGG 11801 ||||||||||| | |||||| Sbjct 37974 TCGATTCCCCGCCAAGGAGG 37955 >seq165153 Length=73126 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||| | |||||||||||| ||||| ||| ||||| | ||| |||||||||||||| Sbjct 11964 TAATCCTTGGTAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGA 12023 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| | ||||| Sbjct 12024 TTCCCCGCCAAGGAG 12038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 650210620195360