Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq317886 86.0 1e-11 >seq317886 Length=47818 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 ||||||||| ||| |||| |||| | ||||| | ||||| |||| || |||||| Sbjct 26719 AGACATTTGCGTGATGATGACGTGGTTATCTTCAACCGTCAACCCACACTTCACAAAATG 26660 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||||| ||| | |||||| || || | | | || || || | ||| | ||| Sbjct 26659 TCTATGATGGGTCACAGAGTCAAGGTCTTGACATGGTCAACCTTCCGTCTTAATCTCAGT 26600 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | ||||| || || || || ||||| ||||| || ||||| | || || ||||| Sbjct 26599 GTAACCACGCCCTACAACGCCGACTTTGACGGAGACGAGATGAACCTTCACGTTCCTCAG 26540 Query 305486 TC 305487 || Sbjct 26539 TC 26538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181904381847034