Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq305346 107 1e-18 seq233793 104 2e-17 seq172955 98.7 7e-16 seq177272 95.1 8e-15 seq33451 95.1 8e-15 seq15040 95.1 8e-15 seq283656 86.0 4e-12 seq171612 86.0 4e-12 >seq305346 Length=360 Score = 107 bits (118), Expect = 1e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| ||||| |||||||| || || || ||||| |||| || | ||| Sbjct 115 ATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCTTCGAGTTG 174 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || ||||| || | |||||||||||| | || | ||||| ||||| ||| || Sbjct 175 CTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGAATCTT 234 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || | |||| || | |||||| |||| || || |||| ||||| || || |||| Sbjct 235 -TGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTG 293 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | || || || |||||||||||| Sbjct 294 TGAGGGTCTTGACGAAGATCTGCATA 319 >seq233793 Length=42987 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| ||||| |||||||| || || || ||||| |||| || | ||| Sbjct 12814 ATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTG 12873 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || || || || | |||||||||||| | || | ||||| ||||| ||| || Sbjct 12874 CTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGAATCTT 12933 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || | |||| || | |||||| |||| || || |||| ||||| || || |||| Sbjct 12934 -TGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTG 12992 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | || || || |||||||||||| Sbjct 12993 TGAGGGTCTTGACGAAGATCTGCATA 13018 Score = 95.1 bits (104), Expect = 8e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| || || |||||||| || || || ||||| |||| || | ||| Sbjct 11557 ATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTG 11616 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || || || || | |||||||||||| | || | ||||| ||||| ||| || Sbjct 11617 CTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGAATCTT 11676 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || | || | || | |||||| |||| || || |||| ||||| || || |||| Sbjct 11677 -TGCCTTTACGTTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTG 11735 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | || || || |||||||||||| Sbjct 11736 TGAGGGTCTTGACGAAGATCTGCATA 11761 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| || || |||||||| || || || ||||| | || |||| ||| Sbjct 13042 ATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGGCCATCTTCCAGTTG 13101 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || || || || | |||||||||||| | || | ||||| ||||| ||| || Sbjct 13102 CTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGAATCTT 13161 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || | |||| || | |||||| |||| || || |||| ||||| || || |||| Sbjct 13162 -TGCCT-TACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTG 13219 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | || || || |||||||||||| Sbjct 13220 TGAGGGTCTTGACGAAGATCTGCATA 13245 Score = 95.1 bits (104), Expect = 8e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| || || |||||||| || || || ||||| |||| |||| ||| Sbjct 13497 ATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCCAGTTG 13556 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || || || || | |||||||||||| | || | ||||| ||||| ||| || Sbjct 13557 CTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGAATCTT 13616 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || | || | || | |||||| |||| || || |||| || || || || |||| Sbjct 13617 -TGCCTTTACGTTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTTATGGTCTTGCCTG 13675 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | || || || |||||||||||| Sbjct 13676 TGAGGGTCTTCACGAAGATCTGCATA 13701 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| || || |||||||| || || || ||||| |||| || | ||| Sbjct 13269 ATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTG 13328 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || || || || | |||||||||||| | || | ||||| ||||| ||| || Sbjct 13329 CTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGAATCTT 13388 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | | || | || | |||||| |||| || || |||| ||||| || || |||| Sbjct 13389 -AGCCTTTACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCTG 13447 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | || || || |||||||||||| Sbjct 13448 TGAGGGTCTTGACGAAGATCTGCATA 13473 >seq172955 Length=397 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| ||||| |||||||| || || || ||||| | || || | ||| Sbjct 298 ATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCGAGTTG 239 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || || || || | |||||||||||| | || | ||||| ||||| ||| || Sbjct 238 CTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGAATCTT 179 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || | |||| || | ||||||||||| || || |||| ||||| || || || | Sbjct 178 -TGCCTTTACATTCTCGATGGTGTCGCTTGGCTCAACCTCAAGAGTGATGGTCTTGCCAG 120 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | || || || |||||||||||| Sbjct 119 TGAGGGTCTTGACGAAGATCTGCATA 94 >seq177272 Length=310 Score = 95.1 bits (104), Expect = 8e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| || || |||||||| || || || ||||| |||| |||| ||| Sbjct 35 ATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCTTCCAGTTG 94 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || || || || | |||||||||||| | || | ||||| ||||| ||| || Sbjct 95 CTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGAATCTT 154 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || | |||| || | |||||| |||| || || || | ||||| || || || | Sbjct 155 -TGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTTGCCAG 213 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | || || || |||||||||||| Sbjct 214 TGAGGGTCTTGACGAAGATCTGCATA 239 >seq33451 Length=524 Score = 95.1 bits (104), Expect = 8e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| || || |||||||| || || || ||||| |||| || | ||| Sbjct 343 ATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGACCGTCCTCGAGTTG 284 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || || || || | |||||||||||| | || | ||||| ||||| |||| | Sbjct 283 CTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGAATTCT 224 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 ||| |||| || | |||||| |||| || || |||| ||||| || || || | Sbjct 223 -TGTCCTTACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGAGTGATGGTCTTGCCAG 165 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | || || || |||||||||||| Sbjct 164 TAAGGGTCTTGACGAAGATCTGCATA 139 >seq15040 Length=705 Score = 95.1 bits (104), Expect = 8e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| || || || |||||||| || || || ||||| |||| || | ||| Sbjct 525 ATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCGTCCTCGAGTTG 466 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||||| || || || | |||||||||||| | || | ||||| ||||| ||| || Sbjct 465 CTTTCCAGCGAAGATTAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGAATCTT 406 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || | |||| || | |||||| |||| || || || | ||||| || || |||| Sbjct 405 -TGCCTTTACATTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTTGCCTG 347 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | || || || |||||||||||| Sbjct 346 TGAGGGTCTTGACGAAGATCTGCATA 321 >seq283656 Length=776 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| ||| || || || ||||| || || || ||||| | || || Sbjct 578 CACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGACAGAGTGCGGCCATCTTC 637 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| ||||||||||| | || | |||||| ||||| Sbjct 638 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGGATACCTTCCTTGTCTTG 697 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 |||||| | | |||| || | || || || | |||||| || | ||||| |||| Sbjct 698 AATTTT-GGCCTTTACATTTTCAATAGTATCACTGGGTTCCACCTCGAGGGTGATGGTTT 756 Query 33719 TACCTGTTAACGTTTTTAC 33737 | || || || ||||| || Sbjct 757 TCCCCGTCAATGTTTTCAC 775 >seq171612 Length=420 Score = 86.0 bits (94), Expect = 4e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 33593 CGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTT 33652 |||| || | ||| || || || || || | |||||||||||| | || | ||||||| Sbjct 415 CGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCTT 356 Query 33653 TGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTG 33711 |||| ||| || || || |||| || | ||||||||||| || || |||| ||| Sbjct 355 TGTCCTGAATCTT-TGCTTTGACATTCTCGATGGTGTCGCTTGGCTCAACCTCAAGAGTG 297 Query 33712 ATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || ||||| | || || || |||||||||||| Sbjct 296 ATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCATA 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327410861412480